A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Oct-2020 number of released structures: 11024
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NDB ID: NA2998  PDB ID: 3WTS 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11E_DA101:DT15_D0.208-0.14-0.334-7.779-2.312-0.75
13E_DA103:DT13_D0.123-0.057-0.057-5.934-2.653-2.206
16E_DA106:DT10_D0.062-0.140.0-0.188-9.7654.478
112E_DC112:DG4_D0.104-0.037-0.10511.244-17.4143.349
115E_DC115:DG1_D0.078-0.120.061-15.712-7.84-1.135
12E_DG102:DC14_D-0.049-0.048-0.252-4.201-4.7011.083
14E_DG104:DC12_D-0.061-0.108-0.2726.426-2.936-0.148
15E_DG105:DC11_D-0.275-0.083-0.333-3.401-6.3232.006
18E_DG108:DC8_D-0.0980.067-0.037-15.327-14.2520.593
110E_DG110:DC6_D-0.084-0.1180.3397.244-0.534-1.092
111E_DG111:DC5_D-0.208-0.0230.0185.484-6.799-2.151
17E_DT107:DA9_D0.085-0.083-0.035-0.9-10.371.025
19E_DT109:DA7_D-0.028-0.0070.341-11.135-8.223-1.984
113E_DT113:DA3_D-0.086-0.0820.093-8.166-19.8351.968
114E_DT114:DA2_D-0.089-0.096-0.203-8.658-17.8222.142
116J_DA101:DT15_I-0.017-0.221-0.671-9.737-6.393-0.283
118J_DA103:DT13_I0.135-0.164-0.16-5.591-6.331-3.409
121J_DA106:DT10_I0.033-0.109-0.0150.946-10.8315.56
127J_DC112:DG4_I0.122-0.118-0.24513.107-14.6782.182
130J_DC115:DG1_I0.136-0.134-0.061-11.817-1.719-0.117
117J_DG102:DC14_I0.016-0.026-0.244-6.399-5.358-2.609
119J_DG104:DC12_I-0.021-0.144-0.1833.646-5.9621.193
120J_DG105:DC11_I-0.153-0.059-0.189-2.581-8.3371.943
123J_DG108:DC8_I-0.0440.0020.225-11.932-11.921-1.149
125J_DG110:DC6_I-0.142-0.1230.3378.5851.289-0.091
126J_DG111:DC5_I-0.0780.0-0.047.694-7.46-1.787
122J_DT107:DA9_I0.127-0.0540.1394.139-7.0553.718
124J_DT109:DA7_I-0.006-0.170.391-12.352-7.3960.22
128J_DT113:DA3_I-0.194-0.099-0.107-5.876-17.0352.252
129J_DT114:DA2_I-0.108-0.081-0.056-3.303-14.5311.008

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.