A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA3317  PDB ID: 3X1S 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.802-0.084-0.201-17.9688.427-2.106
14I_DA4:DT289_J-0.269-0.176-0.2942.424-21.564-2.841
15I_DA5:DT288_J0.5990.4260.29912.257-27.05210.368
17I_DA7:DT286_J0.64-0.1110.169-2.03-16.302-3.842
115I_DA17:DT276_J-0.5950.164-0.2413.292-23.5566.761
117I_DA19:DT274_J-0.650.3730.2124.097-24.72513.918
122I_DA24:DT269_J-0.203-0.20.656-0.947-12.182-9.31
125I_DA27:DT266_J-0.765-0.1261.28512.759-13.3660.133
126I_DA28:DT265_J0.473-0.0021.4527.872-8.8984.852
127I_DA29:DT264_J0.093-0.0790.36415.03-16.452-6.2
128I_DA30:DT263_J-0.281-0.325-0.8261.595-28.8843.756
132I_DA35:DT258_J0.0020.355-0.071-22.479-2.5775.193
137I_DA41:DT252_J0.549-0.1060.46.415-30.219-13.474
138I_DA42:DT251_J-0.2650.4740.445-1.024-19.1194.013
139I_DA43:DT250_J1.056-0.1990.973-11.679-2.0495.493
147I_DA51:DT242_J-0.842-0.2280.96724.87-29.080.807
150I_DA55:DT238_J0.3870.055-0.49327.548-13.4585.943
151I_DA56:DT237_J-0.237-0.397-0.55725.048-49.6654.855
155I_DA61:DT232_J-1.119-0.191-0.1388.945-25.47110.995
161I_DA67:DT226_J-0.30.1140.4860.59-38.642-9.219
166I_DA72:DT221_J-0.1050.1430.5495.053-16.7192.211
167I_DA73:DT220_J-0.424-0.266-0.543-0.813-21.971.077
171I_DA77:DT216_J0.197-0.1080.0371.605-34.166-10.396
176I_DA82:DT211_J0.1030.1370.17-8.38-13.3855.354
177I_DA83:DT210_J0.696-0.190.7380.0130.218-2.071
179I_DA85:DT208_J-0.0420.2050.094-0.142-24.364.385
189I_DA95:DT198_J-0.1750.6120.262-10.602-13.78612.493
193I_DA99:DT194_J1.1290.1070.3684.127-32.368-3.825
1102I_DA109:DT184_J0.197-0.1340.2457.56-22.88-3.674
1103I_DA110:DT183_J1.0120.2130.63414.621-8.0274.678
1104I_DA111:DT182_J0.916-0.0010.78212.456-13.1123.716
1106I_DA113:DT180_J0.528-0.0850.1860.469-9.501-3.754
1107I_DA115:DT178_J-0.377-0.498-1.474-9.565-2.89-3.622
1114I_DA124:DA170_J3.5870.7852.02439.015-19.40813.859
1116I_DA126:DT167_J-0.055-0.096-0.732-17.041-14.812-3.103
1124I_DA139:DT154_J-0.451-0.199-0.155-2.943-18.216-4.316
1126I_DA141:DT152_J1.3730.3140.167-14.028-28.134-5.877
1130I_DA145:DA147_J2.5881.708-0.3332.846-11.251-57.135
13I_DC3:DG290_J-0.6840.3140.33810.15-11.93612.086
18I_DC9:DG284_J-0.4350.091-0.445-0.718-26.7548.516
19I_DC10:DG283_J-1.7180.4970.3090.725-11.7074.987
110I_DC12:DG281_J-0.9540.081-0.0038.351-36.0996.488
111I_DC13:DG280_J-2.1911.2670.775-7.808-12.43818.263
114I_DC16:DG277_J1.547-0.497-1.12720.169-27.59-5.988
120I_DC22:DG271_J-0.2830.318-0.0678.564-31.6225.482
123I_DC25:DG268_J-0.670.1131.129-12.323-3.1451.736
124I_DC26:DG267_J-2.6711.4731.0521.598-27.37942.827
140I_DC44:DG249_J0.4381.5231.579-14.564-29.52436.292
143I_DC47:DG246_J-2.6290.4170.511-9.791-30.935-1.485
145I_DC49:DG244_J0.7430.508-0.378.122-25.7648.802
146I_DC50:DG243_J0.7030.372-0.84829.965-25.98528.395
149I_DC53:DG240_J-1.1350.926-0.5185.502-26.11125.765
154I_DC60:DG233_J0.592-0.250.31425.810.6154.305
160I_DC66:DG227_J-1.2050.3430.9196.3362.53814.917
163I_DC69:DG224_J-0.9080.3280.152.245-29.6099.551
170I_DC76:DG217_J-1.8020.5710.263-7.454-11.12415.045
173I_DC79:DG214_J0.632-0.4360.7543.598-21.43-6.455
178I_DC84:DG209_J0.016-0.2660.9145.6348.2372.559
182I_DC88:DG205_J0.6090.0681.005-9.952-28.204-2.867
183I_DC89:DG204_J-0.073-0.1030.203-6.405-14.095-0.9
195I_DC101:DG192_J-0.097-0.133-0.09611.32-26.426-0.465
1100I_DC107:DG186_J-1.7250.2851.031-20.3629.4492.302
1101I_DC108:DG185_J0.6980.247-0.08625.122-19.8412.769
1108I_DC116:DG177_J-0.3980.175-0.9623.759-10.1441.227
1119I_DC132:DG161_J0.085-0.596-1.2922.29-35.991.36
113I_DG15:DC278_J0.321-0.12-0.735-17.62-21.9553.415
116I_DG18:DC275_J-0.5940.4720.4043.42-18.20412.05
129I_DG31:DC262_J-0.5680.0980.5431.277-6.1544.317
131I_DG33:DC260_J-0.4980.355-0.417-4.322-10.9048.982
136I_DG39:DC254_J0.2070.875-0.556-3.9420.4918.882
142I_DG46:DC247_J-0.1420.324-0.333-8.874-21.0091.344
152I_DG58:DC235_J-0.5990.277-0.64-8.679-14.0047.849
153I_DG59:DC234_J-0.5650.6050.91611.537-19.1515.947
157I_DG63:DC230_J-0.096-0.2430.9222.68810.5292.551
162I_DG68:DC225_J0.846-0.189-0.788-10.602-11.8761.955
165I_DG71:DC222_J0.9410.5610.266-0.823-12.35511.986
172I_DG78:DC215_J0.5070.3950.078-0.374-8.4899.762
175I_DG81:DC212_J-0.423-0.2640.716-5.7596.521.423
181I_DG87:DC206_J-0.311-0.209-0.897-12.221-13.0662.936
188I_DG94:DC199_J0.016-0.119-0.603-21.705-29.1453.858
191I_DG97:DC196_J-0.661-0.2960.3264.126-14.917-2.645
192I_DG98:DC195_J0.037-0.309-1.31-12.668-15.7555.831
194I_DG100:DC193_J2.2940.7280.99815.81-7.83327.913
196I_DG103:DC190_J-0.8540.5370.642-4.021-15.4159.562
1113I_DG121:DC172_J2.4520.6750.59110.747-13.7227.796
1115I_DG125:DC168_J0.7470.215-0.848-9.737-32.4240.277
1120I_DG134:DC159_J-0.4320.1660.106-18.12-13.441-10.964
1121I_DG135:DC158_J-0.0870.310.839-8.096-18.3417.526
1122I_DG137:DC156_J-1.1120.057-0.4263.977-19.1447.04
1123I_DG138:DC155_J-1.5870.491-0.366-4.789-29.0121.079
1129I_DG144:DC149_J0.094-0.082-0.908-23.276-16.2221.173
12I_DT2:DA291_J0.255-0.153-0.1082.005-9.674-2.301
16I_DT6:DA287_J0.8060.2870.03515.673-12.2979.181
112I_DT14:DA279_J1.741-0.1350.46712.899-20.444.539
118I_DT20:DA273_J-0.261-0.106-0.0140.549-23.779-4.235
119I_DT21:DA272_J-0.270.150.403-2.87-16.0522.205
121I_DT23:DA270_J0.5880.124-0.6846.368-42.20410.604
130I_DT32:DA261_J-0.605-0.035-0.44817.226-2.574-3.884
133I_DT36:DA257_J-0.5610.1930.889-12.59-4.9254.062
134I_DT37:DA256_J-0.366-0.1570.859-11.317-11.59-6.681
135I_DT38:DA255_J0.203-0.1620.69-18.044-43.830.518
141I_DT45:DA248_J-0.750.3060.021-16.419-31.9317.278
144I_DT48:DA245_J-0.880.4360.441-6.986-24.31713.527
148I_DT52:DA241_J-0.1630.473-1.7938.162-47.192-9.961
156I_DT62:DA231_J-0.329-0.275-0.9873.832-30.074.544
158I_DT64:DA229_J-0.109-0.1090.3146.739-6.499-3.505
159I_DT65:DA228_J0.1320.220.1898.395-8.5891.533
164I_DT70:DA223_J-0.4160.150.152-3.008-20.95-0.922
168I_DT74:DA219_J-0.339-0.125-0.4971.721-16.729-0.392
169I_DT75:DA218_J-0.722-0.215-0.677-2.545-18.7741.718
174I_DT80:DA213_J-0.594-0.091-0.026-2.363-9.217-1.212
180I_DT86:DA207_J-0.057-0.103-0.0747.939-11.834-1.969
184I_DT90:DA203_J-0.144-0.121-0.187-8.403-30.75-4.41
185I_DT91:DA202_J-0.351-0.111-0.122-27.382-30.724-0.317
186I_DT92:DA201_J-0.4590.32-0.055-18.848-12.63811.3
187I_DT93:DA200_J0.925-0.394-0.138-1.033-1.388-3.044
190I_DT96:DA197_J0.147-0.191.272-10.052-19.567-4.219
197I_DT104:DA189_J-1.074-0.3410.9742.741-2.036-3.014
198I_DT105:DA188_J1.416-0.0630.921-1.398-11.0051.27
199I_DT106:DA187_J1.1460.009-0.5056.023-27.3484.858
1105I_DT112:DA181_J-0.5340.138-0.1146.082-12.7742.484
1109I_DT117:DA176_J-0.4990.0750.698-25.164-24.8474.485
1110I_DT118:DA175_J-0.564-0.0570.853-26.735-17.491-8.979
1111I_DT119:DA174_J-1.316-0.140.708-28.121-17.444-6.957
1112I_DT120:DA173_J0.658-0.3350.223-13.739-27.138-7.059
1117I_DT128:DA165_J0.473-0.2980.089-14.567-36.846-8.726
1118I_DT130:DA163_J1.0120.092-0.702-15.239-53.63217.851
1125I_DT140:DA153_J-1.101-0.1310.126-6.813-11.244-4.712
1127I_DT142:DA151_J0.560.6130.228-6.137-21.67320.107
1128I_DT143:DA150_J0.659-0.299-0.5597.468-11.019-0.115

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.