A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA3318  PDB ID: 3X1T 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13I_DA4:DT289_J0.1240.3750.1299.488-17.2469.655
14I_DA5:DT288_J0.3360.280.1865.197-18.4456.901
16I_DA7:DT286_J1.1130.1770.0612.297-16.1493.193
110I_DA11:DT282_J-0.192-0.026-0.888-5.6824.182-9.263
116I_DA17:DT276_J0.107-0.1380.6365.428-12.8360.863
118I_DA19:DT274_J0.1930.334-0.434-3.355-20.8426.073
121I_DA24:DT269_J-0.44-0.202-0.084-32.135-15.2540.384
124I_DA27:DT266_J0.340.357-0.027-8.295-24.1593.293
125I_DA28:DT265_J-0.208-0.1580.163-0.411-23.0466.745
126I_DA29:DT264_J0.6120.1240.107-0.2-9.590.01
127I_DA30:DT263_J0.4210.2710.2022.433-23.3097.087
132I_DA35:DT258_J0.047-0.05-0.267-27.873-1.2116.221
138I_DA41:DT252_J0.675-0.497-0.4170.875-33.099-0.768
139I_DA42:DT251_J-0.2430.428-1.437-23.203-15.341-1.992
147I_DA51:DT242_J-0.6610.3910.239-6.591-19.9998.173
150I_DA54:DT239_J-1.241-0.44-0.722-6.442-18.2555.744
151I_DA55:DT238_J-1.868-0.384-0.206-0.533-32.4570.876
152I_DA56:DT237_J-0.5940.1940.39113.306-27.7291.07
153I_DA57:DT236_J0.1310.0291.2213.191-44.4775.108
157I_DA61:DT232_J0.1530.074-0.667-17.427-16.4226.661
163I_DA67:DT226_J-0.323-0.3260.2520.094-35.508-8.985
168I_DA72:DT221_J-0.3070.1430.3471.128-9.81110.568
169I_DA73:DT220_J0.305-0.135-0.277-5.451-8.8486.861
173I_DA77:DT216_J0.59-0.0690.179-0.122-32.991-3.526
178I_DA82:DT211_J-0.0950.2370.0783.389-17.2925.458
179I_DA83:DT210_J0.8430.074-0.253-1.383-7.7024.091
181I_DA85:DT208_J0.010.1610.039-4.758-14.6298.516
191I_DA95:DT198_J-0.444-0.179-0.856-12.763-5.014-3.248
195I_DA99:DT194_J1.2360.099-0.343-4.6-44.038-1.195
198I_DA102:DT191_J-1.6820.133-0.127-10.751-18.59214.814
1105I_DA109:DT184_J-0.533-0.1940.09-5.419-26.895-4.026
1106I_DA110:DT183_J0.801-0.3340.239-1.907-15.089-2.916
1107I_DA111:DT182_J0.061-0.559-0.0777.648-5.627-4.793
1109I_DA113:DT180_J0.013-0.252-0.023-8.011-20.3879.94
1111I_DA115:DT178_J-0.567-0.059-0.084-3.5-17.45613.339
1121I_DA126:DT167_J0.7060.009-0.707-31.259-24.7588.886
1122I_DA127:DT166_J0.388-0.125-0.432-27.379-11.3756.351
1128I_DA133:DT160_J-0.3090.041-0.0846.305-22.2624.449
1134I_DA139:DT154_J1.750.022-0.0186.391-16.2947.67
1136I_DA141:DT152_J1.9940.1130.083-11.236-19.331-3.219
12I_DC3:DG290_J-0.1110.41-0.3311.599-14.52512.472
18I_DC9:DG284_J-0.6840.406-0.6751.792-8.85512.233
19I_DC10:DG283_J-1.2750.268-1.0978.777-17.01-2.891
111I_DC12:DG281_J-0.2590.008-0.6842.143-10.574-14.685
112I_DC13:DG280_J-0.778-0.1380.181-10.784-1.456-0.3
115I_DC16:DG277_J0.835-0.068-1.06533.924-35.394.24
119I_DC22:DG271_J0.192-0.14-0.308-20.149-35.606-16.749
122I_DC25:DG268_J-1.5170.3161.628-31.013.59410.731
123I_DC26:DG267_J-0.6460.1320.97-4.678-18.77510.039
140I_DC44:DG249_J-1.0950.7550.1233.854-11.6585.694
143I_DC47:DG246_J-0.051-0.0020.417-4.533-22.34112.448
145I_DC49:DG244_J0.1860.187-0.7372.407-24.93610.78
146I_DC50:DG243_J-0.5840.32-0.054-2.917-14.044-1.397
149I_DC53:DG240_J0.570.069-0.17612.33-18.5019.465
156I_DC60:DG233_J-0.2840.318-0.218-5.364-3.7185.651
162I_DC66:DG227_J0.4450.582-0.07112.075-14.67616.38
165I_DC69:DG224_J-0.331-0.4030.351-3.404-13.91-5.156
172I_DC76:DG217_J-0.754-0.083-0.0626.739-8.1454.609
175I_DC79:DG214_J-0.07-0.3350.71-9.321-23.035-6.803
180I_DC84:DG209_J-0.172-0.152-0.2123.608-9.1555.385
184I_DC88:DG205_J0.130.2380.7036.307-39.3990.036
185I_DC89:DG204_J0.09-0.2241.062-14.221-6.8061.414
197I_DC101:DG192_J-0.2210.5020.8993.035-24.5216.421
1103I_DC107:DG186_J-0.7470.4440.984-26.7861.75613.522
1104I_DC108:DG185_J0.368-0.2620.519.148-9.978-5.941
1110I_DC114:DG179_J0.3440.079-0.2275.827-17.2214.393
1112I_DC116:DG177_J-0.1120.158-0.04317.351-22.3625.843
1124I_DC129:DG164_J-0.40.0571.838-15.435-3.3339.854
1127I_DC132:DG161_J-0.6740.125-0.33115.975-23.1638.916
114I_DG15:DC278_J-0.4310.130.116-0.856-18.8811.08
117I_DG18:DC275_J-0.5530.7380.131-0.096-13.11920.69
128I_DG31:DC262_J0.06-0.161-0.494-10.978-16.6590.179
130I_DG33:DC260_J0.1940.062-0.706-6.066-14.09315.653
136I_DG39:DC254_J0.2330.5770.109-6.93-10.6970.271
137I_DG40:DC253_J-0.913-0.081-0.237-3.247-22.3298.718
142I_DG46:DC247_J-0.1040.6090.065-3.677-16.20316.625
154I_DG58:DC235_J-0.248-0.0010.058-5.139-27.2841.403
155I_DG59:DC234_J-0.4070.261-0.597-16.151-29.2413.688
159I_DG63:DC230_J0.31-0.181-0.09-12.715-8.0771.79
164I_DG68:DC225_J-1.198-0.1450.316-1.386-9.5461.693
167I_DG71:DC222_J0.7620.3640.234-2.54-6.69513.144
174I_DG78:DC215_J-0.1910.0030.124-2.13-8.7552.304
177I_DG81:DC212_J-0.4070.047-0.193-8.336-7.025.686
183I_DG87:DC206_J-0.8420.010.272-0.4191.5636.402
190I_DG94:DC199_J-0.176-0.111-1.219-13.054-12.4932.57
193I_DG97:DC196_J0.2690.4320.2454.074-17.6674.711
194I_DG98:DC195_J0.4230.4510.2365.748-15.0716.128
196I_DG100:DC193_J-0.2370.4510.8265.613-9.55317.257
199I_DG103:DC190_J0.6630.173-0.894-18.701-17.107-3.642
1117I_DG121:DC172_J-1.2910.136-0.461-5.876-14.606-3.004
1118I_DG122:DC171_J-0.678-0.44-0.01129.3286.535-15.283
1120I_DG125:DC168_J1.1930.309-1.4490.722-20.426-5.986
1126I_DG131:DC162_J-0.184-0.425-0.623-23.665-23.7047.134
1129I_DG134:DC159_J-0.179-0.064-0.5544.404-5.0883.461
1130I_DG135:DC158_J0.802-0.3180.078-2.8361.854-2.521
1132I_DG137:DC156_J0.1810.285-0.983-7.39-27.1413.187
1133I_DG138:DC155_J-1.0220.249-0.558-16.145-17.23612.741
1139I_DG144:DC149_J0.823-0.138-0.809-6.442-30.341-0.366
11I_DT2:DA291_J0.70.1260.133-1.675-4.8083.564
15I_DT6:DA287_J-0.4970.0410.01114.713-9.573-6.113
17I_DT8:DA285_J0.02-0.136-0.1422.533-10.9580.874
113I_DT14:DA279_J-0.3630.1570.558-11.329-18.441-2.652
120I_DT23:DA270_J-0.520.494-0.155-24.147-29.0697.4
129I_DT32:DA261_J-0.327-0.003-0.502-1.15-9.0094.689
131I_DT34:DA259_J-0.6820.397-0.783-1.644-17.511.131
133I_DT36:DA257_J-0.68-0.0490.69-18.03-10.8881.882
134I_DT37:DA256_J-0.988-0.2240.169-8.955-26.562.201
135I_DT38:DA255_J0.1750.074-0.022-5.038-34.131-1.002
141I_DT45:DA248_J-1.048-0.3110.921-7.653-35.603-2.921
144I_DT48:DA245_J-1.8910.0110.069-3.101-19.6890.375
148I_DT52:DA241_J-1.2240.044-0.164-2.373-20.369-10.855
158I_DT62:DA231_J-0.128-0.085-0.253-4.949-16.7721.988
160I_DT64:DA229_J-0.265-0.0710.107-3.492-15.4290.166
161I_DT65:DA228_J-0.3110.259-0.352.168-18.45910.241
166I_DT70:DA223_J0.085-0.007-0.051-5.134-18.257-1.19
170I_DT74:DA219_J0.280.019-0.304-0.243-12.0026.175
171I_DT75:DA218_J-0.4940.10.108-3.711-12.5738.03
176I_DT80:DA213_J-0.3620.078-0.067-8.232-13.3664.936
182I_DT86:DA207_J-0.491-0.0580.1271.294-16.4913.379
186I_DT90:DA203_J-0.267-0.020.547-16.572-27.29-5.775
187I_DT91:DA202_J0.6670.258-0.236-4.158-15.5193.457
188I_DT92:DA201_J0.650.112-0.7540.65-8.2549.244
189I_DT93:DA200_J-0.263-0.546-1.2967.597-18.735-1.825
192I_DT96:DA197_J0.206-0.0530.0888.52-15.4913.116
1100I_DT104:DA189_J-0.3560.132-0.6424.766-9.1312.831
1101I_DT105:DA188_J0.165-0.24-0.40210.999-13.5143.46
1102I_DT106:DA187_J0.180.028-1.117-3.731-36.0512.837
1108I_DT112:DA181_J0.505-0.023-0.6214.822-14.5338.782
1113I_DT117:DA176_J-0.370.1680.154-6.426-25.4523.291
1114I_DT118:DA175_J-0.087-0.1020.867-17.08-11.8760.637
1115I_DT119:DA174_J-0.125-0.1030.417-12.811-23.7619.083
1116I_DT120:DA173_J-1.164-0.1050.001-12.223-16.845-9.713
1119I_DT123:DA170_J0.246-0.096-0.73629.528-11.359-17.395
1123I_DT128:DA165_J-0.1160.3510.898-17.195-1.7941.754
1125I_DT130:DA163_J0.035-0.2240.486-4.011-31.869-14.404
1131I_DT136:DA157_J1.0650.2680.04815.375-14.1679.628
1135I_DT140:DA153_J-1.567-0.1650.295-6.577-12.5091.968
1137I_DT142:DA151_J-0.170.0150.311-8.423-11.9777.156
1138I_DT143:DA150_J-1.130.3050.054.136-9.9143.923
1140I_DT146:DA147_J-1.8320.405-0.20623.129-28.967-32.126

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.