A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 4-Dec-2019 number of released structures: 10490
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NDB ID: NA3319  PDB ID: 3X1U 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA1:DT292_J0.859-0.366-1.059-21.51412.625-21.213
14I_DA4:DT289_J0.070.039-0.523-7.709-15.196.995
15I_DA5:DT288_J1.0350.203-0.043-0.463-22.59216.548
17I_DA7:DT286_J0.671-0.2840.2132.744-21.5730.196
111I_DA11:DT282_J-1.647-0.4050.55315.551.439-4.841
115I_DA17:DT276_J-0.765-0.1980.3343.693-9.4656.198
117I_DA19:DT274_J0.2450.4550.3935.288-10.03712.417
122I_DA24:DT269_J-0.138-0.09-0.371-19.527-8.702-10.969
124I_DA27:DT266_J-0.7860.1950.7254.889-9.181-2.734
125I_DA28:DT265_J-0.455-0.2520.7957.412-2.8290.448
126I_DA29:DT264_J0.6510.0790.5184.289-10.94-7.166
127I_DA30:DT263_J0.54-0.273-0.2894.63-22.5520.131
132I_DA35:DT258_J0.0920.1571.125-27.682-4.0988.268
137I_DA41:DT252_J0.1360.304-0.5271.61-32.3795.572
138I_DA43:DT250_J-0.0820.088-0.201-18.2760.588-0.558
146I_DA51:DT242_J-2.968-0.731-1.523-22.088-25.269-0.377
149I_DA54:DT239_J0.9-0.085-0.238-1.269-16.1512.013
150I_DA55:DT238_J-1.423-0.493-1.062-2.342-39.5445.676
151I_DA56:DT237_J-0.2410.1230.07112.553-35.9343.234
152I_DA57:DT236_J0.570.360.3392.009-49.66312.493
156I_DA61:DT232_J-1.036-0.2030.3270.193-21.4468.871
162I_DA67:DT226_J0.229-0.4280.3348.447-24.907-8.519
166I_DA72:DT221_J-0.009-0.373-0.2532.13-10.957-0.654
167I_DA73:DT220_J0.755-0.0610.197-5.054-2.4934.875
171I_DA77:DT216_J0.550.283-0.367-13.336-23.317-3.122
176I_DA82:DT211_J-0.0310.2-0.825-15.876-0.4521.612
177I_DA83:DT210_J0.35-0.032-0.447-3.932.7921.647
179I_DA85:DT208_J-0.5920.187-0.561-7.552-20.33710.758
189I_DA95:DT198_J-0.1350.228-0.391-12.6461.927-2.916
193I_DA99:DT194_J0.804-0.005-0.602-7.606-38.7185.021
196I_DA102:DT191_J0.450.57-0.331-1.517-28.4424.603
1103I_DA109:DT184_J0.569-0.458-0.38410.11-18.695-5.831
1104I_DA110:DT183_J0.111-0.0960.5919.0110.9031.761
1105I_DA111:DT182_J-0.4410.1110.0187.77413.0688.24
1107I_DA113:DT180_J0.4190.0940.112-9.307-6.3751.896
1109I_DA115:DT178_J0.28-0.597-2.021-26.351-26.239.296
1118I_DA126:DT167_J-0.156-0.0220.243-4.968-23.275-5.323
1119I_DA127:DT166_J0.9580.131-0.159-10.202-14.85.92
1124I_DA133:DT160_J-1.2310.176-0.695-1.969-29.0117.933
1129I_DA139:DT154_J-0.3030.089-0.379-5.248-7.59614.134
1133I_DA145:DT148_J0.5960.434-0.513-8.212-21.761-16.66
13I_DC3:DG290_J-0.7540.645-0.409-0.873-6.34520.29
19I_DC9:DG284_J0.1940.458-0.626-2.714-18.16714.826
110I_DC10:DG283_J-0.2691.037-0.2020.543-16.85717.976
112I_DC12:DG281_J-0.998-0.139-0.50812.267-14.858-7.83
113I_DC13:DG280_J-1.0390.110.448-20.581-7.5683.676
114I_DC16:DG277_J0.945-0.198-1.39926.988-24.9531.743
120I_DC22:DG271_J-0.5190.5440.223-18.55-13.609-0.136
123I_DC26:DG267_J-1.0620.4730.124-2.375-15.6664.351
139I_DC44:DG249_J-0.3440.7851.066-27.332.49520.739
142I_DC47:DG246_J-1.8380.7680.959-9.454-34.8624.163
144I_DC49:DG244_J-0.2680.689-0.458-0.495-28.99419.478
145I_DC50:DG243_J-1.7760.2780.539-16.855-13.61613.253
148I_DC53:DG240_J0.68-0.656-0.7853.566-16.188-5.992
155I_DC60:DG233_J0.628-0.0290.277.9754.40513.016
161I_DC66:DG227_J-2.1120.2380.733.815-2.6318.464
164I_DC69:DG224_J-0.427-0.43-0.34611.022-27.254-0.858
170I_DC76:DG217_J0.030.0760.014-6.535-6.733.067
173I_DC79:DG214_J0.017-0.3280.8-6.383-25.0341.961
178I_DC84:DG209_J-0.238-0.012-0.3437.6113.0054.323
182I_DC88:DG205_J-0.828-0.1071.202-13.578-19.193-8.584
183I_DC89:DG204_J-0.7510.1090.62-15.449-3.6782.301
195I_DC101:DG192_J0.196-0.132-0.77929.318-33.5376.545
1101I_DC107:DG186_J-1.6550.7980.679-22.2426.3636.6
1102I_DC108:DG185_J-1.4010.2850.39310.199-24.16-5.348
1108I_DC114:DG179_J0.4560.0790.186-5.059-1.9718.756
1110I_DC116:DG177_J-0.5430.564-0.271-4.156-12.03716.685
1120I_DC129:DG164_J-1.5930.6550.548-3.899-12.76120.663
1123I_DC132:DG161_J-1.3440.5280.24422.877-32.97310.012
116I_DG18:DC275_J0.0871.093-0.1936.845-16.76424.132
128I_DG31:DC262_J-0.0690.068-0.565-13.554-7.714.423
130I_DG33:DC260_J1.1440.6160.162-2.751-1.55211.547
136I_DG40:DC253_J-0.422-0.0561.07817.268-17.5196.861
141I_DG46:DC247_J-2.990.1670.016-17.77-19.37714.021
153I_DG58:DC235_J-0.072-0.148-0.743-3.595-16.6480.968
154I_DG59:DC234_J0.2060.5651.2811.573-19.514.582
158I_DG63:DC230_J0.464-0.31-0.505-14.414.254-0.4
163I_DG68:DC225_J0.6630.1770.0416.527-18.3884.442
165I_DG71:DC222_J-0.3590.5360.5132.65-2.83412.182
172I_DG78:DC215_J0.2350.510.076-8.276-19.83117.66
175I_DG81:DC212_J0.0520.0760.7-2.0326.3693.659
181I_DG87:DC206_J-0.023-0.0370.7192.98711.12611.664
188I_DG94:DC199_J0.274-0.361-1.64-21.02-18.7511.995
191I_DG97:DC196_J1.540.690.96619.617-16.60111.58
192I_DG98:DC195_J0.3320.311-0.5190.321-27.4415.486
194I_DG100:DC193_J1.8610.563-0.2289.607-5.50125.438
197I_DG103:DC190_J0.5540.5820.421-15.122-15.8625.686
1114I_DG121:DC172_J0.3190.229-0.071-6.069-15.9332.934
1115I_DG122:DC171_J1.074-0.1080.64720.151-2.084-9.822
1117I_DG125:DC168_J0.9350.036-1.0229.555-25.747-11.809
1122I_DG131:DC162_J0.0450.423-1.148-5.785-22.79314.624
1125I_DG134:DC159_J1.510.975-0.01514.5745.01313.374
1126I_DG135:DC158_J0.6290.143-0.466-1.7963.362-3.012
1127I_DG137:DC156_J1.2721.099-0.377-0.396-22.32829.387
1128I_DG138:DC155_J-0.156-0.273-1.6542.43-11.95112.558
1132I_DG144:DC149_J0.543-0.321-1.282.085-25.746-11.487
12I_DT2:DA291_J-0.221-0.108-0.9270.919-8.057-4.145
16I_DT6:DA287_J0.05-0.29-0.1679.982-16.745-0.477
18I_DT8:DA285_J-0.207-0.001-0.62411.198-8.91211.38
118I_DT20:DA273_J-0.638-0.282-0.21111.814-17.7213.25
119I_DT21:DA272_J-1.184-0.071-0.28-13.734-22.8293.818
121I_DT23:DA270_J-0.7640.298-0.588-14.901-16.136-2.039
129I_DT32:DA261_J-0.34-0.138-1.8450.53-13.590.058
131I_DT34:DA259_J0.751-0.0410.365-1.923-16.618-0.027
133I_DT36:DA257_J-0.543-0.0871.535-16.3115.844-0.984
134I_DT37:DA256_J-0.237-0.1020.5611.653-5.341-2.083
135I_DT38:DA255_J1.044-0.2790.541-2.559-35.6632.724
140I_DT45:DA248_J-1.1440.2261.144-33.087-35.133-4.606
143I_DT48:DA245_J0.0530.534-0.167-9.135-27.118-7.079
147I_DT52:DA241_J0.3440.162-1.247-8.19-7.716-18.504
157I_DT62:DA231_J0.4010.121-0.37-6.872-17.8951.936
159I_DT64:DA229_J-0.064-0.3880.3782.371-0.198-0.661
160I_DT65:DA228_J-0.664-0.2010.20910.231-2.351-2.913
168I_DT74:DA219_J-0.707-0.0460.6273.088-2.1717.593
169I_DT75:DA218_J-0.75-0.0260.0651.131-13.934-0.223
174I_DT80:DA213_J-1.071-0.1170.236-10.423-10.6764.131
180I_DT86:DA207_J-0.256-0.3230.139-5.783-12.6635.275
184I_DT90:DA203_J-0.397-0.1690.17-14.028-30.2584.392
185I_DT91:DA202_J-0.001-0.016-0.622-14.964-27.7081.077
186I_DT92:DA201_J0.988-0.245-0.408-2.093-11.5729.763
187I_DT93:DA200_J0.538-0.403-0.195-11.252-2.764-0.019
190I_DT96:DA197_J1.443-0.2830.4494.314-13.2250.029
198I_DT104:DA189_J-0.234-0.008-0.09112.21-13.551-1.557
199I_DT105:DA188_J0.7240.0310.317-7.089-20.24-0.526
1100I_DT106:DA187_J-0.267-0.25-0.375-7.321-31.877-0.463
1106I_DT112:DA181_J-0.117-0.3920.05613.11-3.3471.28
1111I_DT118:DA175_J-1.33-0.1220.763-18.296-6.6691.171
1112I_DT119:DA174_J-0.865-0.5890.732-13.761-18.827-3.136
1113I_DT120:DA173_J0.644-0.0990.168-8.369-29.184-4.68
1116I_DT123:DA170_J-0.940.468-0.62641.267-8.351-1.553
1121I_DT130:DA163_J0.0330.1110.08213.61-29.672.222
1130I_DT140:DA153_J-1.922-0.1550.5363.459-13.201-3.811
1131I_DT142:DA151_J-0.2980.7140.361-1.865-23.7522.044
1134I_DT146:DA147_J0.2840.518-0.3326.65-8.264-34.948

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.