A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: NA2549  PDB ID: 3ZPL 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA1:DT22_D0.311-0.2230.0755.732-15.6280.972
12C_DA2:DT21_D0.179-0.1660.13111.213-12.424-1.397
13C_DA3:DT20_D0.189-0.251-0.0685.762-16.941-0.775
15C_DA5:DT18_D-0.006-0.060.212-3.294-13.026-2.035
19C_DA9:DT14_D0.061-0.3590.15.957-14.053-2.53
111C_DA11:DT12_D-0.106-0.0860.4052.202-12.0912.923
116C_DA16:DT7_D0.1110.1020.156-0.993-12.252-0.757
117C_DA17:DT6_D0.2620.0760.1444.04-10.84-5.685
113C_DC13:DG10_D0.179-0.2560.111-0.738-17.246-1.233
115C_DC15:DG8_D-0.1770.0070.093-9.456-14.132-0.787
119C_DC19:DG4_D-0.041-0.134-0.0732.59-11.104-0.959
14C_DG4:DC19_D0.076-0.151-0.235-2.975-14.452-0.097
18C_DG8:DC15_D0.288-0.1150.1127.309-12.314-0.758
110C_DG10:DC13_D-0.166-0.1310.2032.781-14.17-1.661
16C_DT6:DA17_D0.078-0.0130.082-4.721-14.009-3.513
17C_DT7:DA16_D0.258-0.1150.114-2.247-14.2490.234
112C_DT12:DA11_D0.242-0.2160.3222.28-13.0382.965
114C_DT14:DA9_D-0.006-0.318-0.045-6.193-16.8-2.324
118C_DT18:DA5_D0.165-0.0670.2222.542-10.803-3.694
120C_DT20:DA3_D-0.08-0.271-0.08-1.759-14.614-2.839
121C_DT21:DA2_D-0.116-0.3020.165-8.614-11.731-3.798
122C_DT22:DA1_D0.042-0.4170.108-0.008-12.662-5.581
123G_DA1:DT22_H0.375-0.2610.1434.769-14.736-3.808
124G_DA2:DT21_H0.302-0.0760.29711.825-12.154-3.524
125G_DA3:DT20_H0.447-0.2470.0936.332-17.292-1.327
127G_DA5:DT18_H-0.02-0.3530.3121.317-14.659-3.233
131G_DA9:DT14_H-0.203-0.377-0.1046.814-14.19-3.339
133G_DA11:DT12_H-0.189-0.1840.1471.538-13.211.762
138G_DA16:DT7_H-0.098-0.1180.015-0.1-13.365-0.045
139G_DA17:DT6_H-0.0720.020.0453.293-13.268-4.713
135G_DC13:DG10_H0.139-0.3440.026-1.455-16.49-1.859
137G_DC15:DG8_H-0.154-0.1180.107-9.203-12.461-1.252
141G_DC19:DG4_H-0.063-0.228-0.1923.856-13.993-1.981
126G_DG4:DC19_H0.178-0.2540.02.118-15.638-1.661
130G_DG8:DC15_H-0.084-0.2080.1038.612-11.983-2.212
132G_DG10:DC13_H-0.23-0.249-0.0682.577-13.672-2.44
128G_DT6:DA17_H-0.088-0.2020.018-3.401-16.174-3.495
129G_DT7:DA16_H-0.097-0.246-0.053-1.265-16.815-0.274
134G_DT12:DA11_H0.24-0.2960.1181.791-12.8842.178
136G_DT14:DA9_H-0.058-0.363-0.062-6.172-14.381-2.361
140G_DT18:DA5_H0.203-0.1120.1243.922-13.201-3.336
142G_DT20:DA3_H-0.298-0.264-0.172-0.016-17.11-1.989
143G_DT21:DA2_H-0.383-0.1980.043-5.344-13.524-3.203
144G_DT22:DA1_H-0.527-0.307-0.05-0.54-17.209-2.74

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.