A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 18-Sep-2019 number of released structures: 10387
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NDB ID: NA2549  PDB ID: 3ZPL 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11CC_DA1DA2:DT21DT22_DD-0.276-0.163.1221.736-1.75138.019-0.0340.6323.111-2.684-2.66238.096
12CC_DA2DA3:DT20DT21_DD-0.399-0.2023.3030.0731.56337.798-0.5140.6263.2912.412-0.11337.829
13CC_DA3DG4:DC19DT20_DD-0.162-0.1933.6480.439.28234.351-1.8190.3353.47815.371-0.71135.549
15CC_DA5DT6:DA17DT18_DD-0.394-1.1443.3880.318-1.93933.408-1.6520.7393.444-3.369-0.55333.464
19CC_DA9DG10:DC13DT14_DD0.367-0.0773.283-1.1796.2234.381-1.069-0.7893.20610.4141.97434.942
111CC_DA11DT12:DA11DT12_DD-0.044-0.5983.3420.822-0.33834.158-0.9630.2073.346-0.576-1.39934.17
116CC_DA16DA17:DT6DT7_DD-0.14-0.5533.086-1.477-1.66836.222-0.6660.0293.11-2.682.37336.289
117CC_DA17DT18:DA5DT6_DD0.479-1.1073.396-0.193-1.12432.492-1.772-0.8913.428-2.0070.34432.512
113CC_DC13DT14:DA9DG10_DD-0.37-0.0783.2811.4525.68135.041-0.9590.8183.2129.355-2.3935.513
115CC_DC15DA16:DT7DG8_DD0.1280.5643.194-1.3187.61932.454-0.279-0.4413.23213.3962.31733.338
119CC_DC19DT20:DA3DG4_DD0.099-0.2383.5090.0577.27634.34-1.558-0.1553.38912.154-0.09535.08
14CC_DG4DA5:DT18DC19_DD0.706-0.7633.198-2.0015.70227.2-2.877-1.922.92211.9384.1927.851
18CC_DG8DA9:DT14DC15_DD-0.3280.213.248-1.3173.93433.926-0.2640.353.2616.7112.24734.171
110CC_DG10DA11:DT12DC13_DD0.034-0.313.19-3.668-0.27739.79-0.423-0.4613.177-0.4065.37639.953
16CC_DT6DT7:DA16DA17_DD0.003-0.593.1270.945-2.14737.083-0.6510.1163.154-3.371-1.48337.154
17CC_DT7DG8:DC15DA16_DD-0.220.5923.1140.9427.76931.662-0.2620.5513.15913.973-1.69432.591
112CC_DT12DC13:DG10DA11_DD-0.061-0.2233.2353.466-1.18140.992-0.1910.4583.224-1.682-4.93741.149
114CC_DT14DC15:DG8DA9_DD0.3010.23.3020.8974.82934.18-0.422-0.3673.3068.164-1.51634.521
118CC_DT18DC19:DG4DA5_DD-0.645-0.83.2261.6126.04226.245-3.1871.7752.92813.072-3.48826.967
120CC_DT20DT21:DA2DA3_DD0.395-0.3013.347-0.3991.19237.715-0.623-0.6633.3321.8430.61837.735
121CC_DT21DT22:DA1DA2_DD0.076-0.43.083-2.831-4.76139.721-0.067-0.4183.096-6.9664.14240.09
122GG_DA1DA2:DT21DT22_HH-0.166-0.2263.0971.734-2.68138.093-0.0250.4613.095-4.099-2.65238.222
123GG_DA2DA3:DT20DT21_HH-0.377-0.2153.253-0.6191.91738.577-0.560.4943.2442.90.93738.627
124GG_DA3DG4:DC19DT20_HH-0.275-0.1023.470.4617.86133.902-1.4390.5343.35913.26-0.77834.778
126GG_DA5DT6:DA17DT18_HH-0.349-1.0223.4521.15-3.4834.751-1.140.7673.522-5.807-1.91834.938
130GG_DA9DG10:DC13DT14_HH0.296-0.1393.33-1.8717.86935.429-1.336-0.743.20812.7263.02636.311
132GG_DA11DT12:DA11DT12_HH-0.04-0.5883.3260.6891.00734.515-1.1490.1753.3071.696-1.16134.536
137GG_DA16DA17:DT6DT7_HH-0.113-0.4473.08-0.77-2.12537.096-0.4340.0813.101-3.3371.2137.163
138GG_DA17DT18:DA5DT6_HH0.462-0.9453.296-0.605-1.55534.512-1.348-0.8723.326-2.6191.01934.552
134GG_DC13DT14:DA9DG10_HH-0.353-0.0663.2940.9137.06634.937-1.1390.713.2111.619-1.50235.634
136GG_DC15DA16:DT7DG8_HH0.190.5783.1310.1837.69732.024-0.265-0.3063.18213.705-0.32632.913
140GG_DC19DT20:DA3DG4_HH0.172-0.2623.464-0.0518.47733.72-1.801-0.2973.30314.3330.08634.739
125GG_DG4DA5:DT18DC19_HH0.686-0.7063.24-1.0994.46328.316-2.402-1.6253.0669.0482.22728.68
129GG_DG8DA9:DT14DC15_HH-0.260.1623.271-0.724.12134.252-0.3690.3273.2726.9651.21834.499
131GG_DG10DA11:DT12DC13_HH0.004-0.3443.245-3.562-1.47240.005-0.334-0.4083.243-2.1465.19140.183
127GG_DT6DT7:DA16DA17_HH-0.054-0.4543.10.723-1.90337.639-0.4690.1723.117-2.948-1.1237.692
128GG_DT7DG8:DC15DA16_HH-0.2590.5973.095-1.7666.69731.775-0.0670.1643.16212.0523.17832.502
133GG_DT12DC13:DG10DA11_HH-0.018-0.23.2613.117-0.21641.168-0.260.363.252-0.306-4.42641.282
135GG_DT14DC15:DG8DA9_HH0.2760.2453.3020.633.91434.355-0.201-0.3653.3136.599-1.06334.576
139GG_DT18DC19:DG4DA5_HH-0.695-0.7883.190.8635.57127.298-2.8991.642.95111.646-1.80527.863
141GG_DT20DT21:DA2DA3_HH0.387-0.2863.242-0.2011.08637.645-0.582-0.6253.2311.6820.31137.661
142GG_DT21DT22:DA1DA2_HH0.17-0.2833.106-2.076-2.14438.248-0.176-0.5063.104-3.2663.16238.359

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.