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As of 29-Jun-2022 number of released structures: 12153
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NDB ID: PH0049  PDB ID: 3E3J 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
3E3J|1|R|A|43E3J|1|R|A|40BPh
3E3J|1|R|A|43E3J|1|R|G|3s53
3E3J|1|R|A|43E3J|1|R|G|5s35
3E3J|1|R|A|73E3J|1|R|A|70BPh
3E3J|1|R|A|73E3J|1|R|A|8s35
3E3J|1|R|A|73E3J|1|R|U|6s53
3E3J|1|R|A|83E3J|1|R|A|7s53
3E3J|1|R|A|83E3J|1|R|A|80BPh
3E3J|1|R|G|13E3J|1|R|G|2s35
3E3J|1|R|G|23E3J|1|R|G|1s53
3E3J|1|R|G|23E3J|1|R|G|20BPh
3E3J|1|R|G|23E3J|1|R|G|3s35
3E3J|1|R|G|33E3J|1|R|A|4s35
3E3J|1|R|G|33E3J|1|R|G|2s53
3E3J|1|R|G|33E3J|1|R|G|30BPh
3E3J|1|R|G|53E3J|1|R|A|4s53
3E3J|1|R|G|53E3J|1|R|G|50BPh
3E3J|1|R|G|53E3J|1|R|U|6s35
3E3J|1|R|U|63E3J|1|R|A|7s35
3E3J|1|R|U|63E3J|1|R|G|5s53
3E3J|1|R|U|63E3J|1|R|U|60BPh
3E3J|1|Z|A|43E3J|1|Z|A|40BPh
3E3J|1|Z|A|43E3J|1|Z|G|3s53
3E3J|1|Z|A|43E3J|1|Z|G|5s35
3E3J|1|Z|A|73E3J|1|Z|A|70BPh
3E3J|1|Z|A|73E3J|1|Z|A|8s35
3E3J|1|Z|A|73E3J|1|Z|U|6s53
3E3J|1|Z|A|83E3J|1|Z|A|7s53
3E3J|1|Z|A|83E3J|1|Z|A|80BPh
3E3J|1|Z|G|13E3J|1|Z|G|2s35
3E3J|1|Z|G|23E3J|1|Z|G|1s53
3E3J|1|Z|G|23E3J|1|Z|G|20BPh
3E3J|1|Z|G|23E3J|1|Z|G|3s35
3E3J|1|Z|G|33E3J|1|Z|A|4s35
3E3J|1|Z|G|33E3J|1|Z|G|2s53
3E3J|1|Z|G|33E3J|1|Z|G|30BPh
3E3J|1|Z|G|53E3J|1|Z|A|4s53
3E3J|1|Z|G|53E3J|1|Z|G|50BPh
3E3J|1|Z|G|53E3J|1|Z|U|6s35
3E3J|1|Z|U|63E3J|1|Z|A|7s35
3E3J|1|Z|U|63E3J|1|Z|G|5s53
3E3J|1|Z|U|63E3J|1|Z|U|60BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (14)Relative Frequency
0BPh141.000
Base-StackingCount (4)Relative Frequency
s5341.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)