A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: NA1115  PDB ID: 3RZD 


RNA Base-Pairs, Stacking and other pairwise interactions

CSV Format

Nucleotide 1Nucleotide 2Base-PairsBase-StackingBase-Phosphate
3RZD|1|R|A|83RZD|1|R|A|80BPh
3RZD|1|R|A|83RZD|1|R|G|7s53
3RZD|1|R|A|83RZD|1|R|G|9s35
3RZD|1|R|G|103RZD|1|R|G|100BPh
3RZD|1|R|G|103RZD|1|R|G|9s53
3RZD|1|R|G|73RZD|1|R|A|8s35
3RZD|1|R|G|73RZD|1|R|G|70BPh
3RZD|1|R|G|93RZD|1|R|A|8s53
3RZD|1|R|G|93RZD|1|R|G|10s35
3RZD|1|R|G|93RZD|1|R|G|90BPh


Base-PairsCount (0)Relative Frequency
Base-PhosphateCount (4)Relative Frequency
0BPh41.000
Base-StackingCount (2)Relative Frequency
s5321.000

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)