A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
Search for released structures

NDB ID: UR0010  PDB ID: 488D 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16A_C30:C170_D2.77-1.6890.59318.829-8.756-5.431
19A_C103:G113_B-0.602-0.0930.498-1.136-18.456-14.483
11A_G25:A14_D1.3931.934-2.4390.503-30.179-46.093
13A_G23:C13_C1.079-0.1820.0631.395-3.863-9.476
14A_G22:C12_C0.185-0.510.2210.402-21.8931.027
17A_G101:C111_B0.9160.350.227-1.586-19.4850.288
18A_G102:C112_B-0.172-0.770.3011.269-23.833-2.095
12A_U24:A14_C0.6520.0110.302-1.742-16.9120.39
15A_U21:A11_C-0.912-0.437-0.76610.537-1.7157.673
110B_A151:U161_D0.5991.4630.93916.6-16.61835.8

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.