A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: UR0010  PDB ID: 488D 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
11AA_G25U24:A14A14_CD-0.616-0.7051.3293.6226.37422.926-2.4381.9010.99215.535-8.82724.054
13AA_G23G22:C12C13_CC0.874-2.533.0043.6926.35922.591-7.904-1.1062.32615.708-9.11823.743
14AA_G22U21:A11C12_CC0.218-2.1153.2336.034-5.74822.405-3.091.5943.592-14.177-14.88323.886
16AA_G101G102:C112C111_BB0.132-2.5692.7740.748.90226.641-6.814-0.1451.83818.664-1.55228.074
17AA_G102C103:G113C112_BB-0.445-1.4353.249-1.9444.52122.333-5.1610.462.93211.4944.94122.862
12AA_U24G23:C13A14_CC-0.214-1.0123.1830.9262.4533.821-2.1130.513.0984.203-1.58933.919
15AA_U21C30:C170A11_DC0.433-1.2092.857-11.1287.32147.433-1.912-1.2192.58.89713.52549.163

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.