A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA2220  PDB ID: 4AWL 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
16I_DA6:DT-6_J0.07-0.077-0.123-3.701-1.233-2.649
110I_DA10:DT-10_J0.2780.0040.29-0.7564.84610.466
111I_DA11:DT-11_J-0.452-0.0660.62216.785-12.834-0.671
114I_DA14:DT-14_J-0.003-0.241-0.277-7.063-12.7540.492
118I_DA18:DT-18_J-0.4630.177-0.0058.901-11.826-6.397
124I_DA24:DT-24_J0.176-0.05-0.042-6.84-17.0693.361
13I_DC3:DG-3_J0.232-0.0590.09-4.8874.818-1.488
18I_DC8:DG-8_J0.377-0.384-0.44215.697-11.691-2.093
19I_DC9:DG-9_J-0.0140.0160.16912.5795.646-4.594
113I_DC13:DG-13_J0.426-0.2230.281-2.254-15.120.408
115I_DC15:DG-15_J0.498-0.266-0.2783.05-14.074-3.376
116I_DC16:DG-16_J-0.791-0.0360.026-6.65-12.635-7.155
120I_DC20:DG-20_J0.3040.0751.176-16.371-16.1198.521
122I_DC22:DG-22_J0.333-0.129-0.425-0.77-2.8812.923
15I_DG5:DC-5_J-0.5920.193-0.821-22.69-14.4594.45
17I_DG7:DC-7_J0.235-0.1710.1431.111-9.625-5.109
117I_DG17:DC-17_J-0.131-0.1570.1644.881-9.793-5.908
119I_DG19:DC-19_J1.3110.0110.192-3.99-30.7111.216
123I_DG23:DC-23_J0.5240.126-0.716-3.53-7.591-8.98
11I_DT1:DA-1_J-1.185-0.0110.83-11.005-33.5719.066
12I_DT2:DA-2_J-0.516-0.146-0.075-4.601-11.15-5.092
14I_DT4:DA-4_J-1.0540.070.777-8.589-22.105-4.933
112I_DT12:DA-12_J-0.2730.0430.228-4.237-24.792-7.392
121I_DT21:DA-21_J-1.0980.060.135-10.688-8.744-5.469
125I_DT25:DA-25_J-1.1630.134-0.34619.132-23.58713.104

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.