4B3P: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA2191 PDB ID: 4B3P

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	9	D_DA9:U26_R	0.851	0.17	-0.424	-4.678	0.203	-0.9
1	15	D_DA15:U20_R	-0.311	-0.057	-0.499	-4.002	-5.426	-2.544
1	17	D_DA17:U18_R	0.386	-0.177	-0.651	-0.763	-7.956	0.572
1	21	D_DA21:U14_R	0.589	0.873	0.026	-4.294	-16.237	13.158
1	6	D_DC6:G29_R	0.427	-0.05	-0.191	5.819	-5.15	2.568
1	12	D_DC12:G23_R	-0.591	0.194	-0.565	11.959	2.782	-0.77
1	13	D_DC13:G22_R	0.613	-0.145	-0.278	13.842	-7.38	1.047
1	1	D_DG1:C34_R	-0.594	-0.257	-0.73	-1.421	1.259	5.086
1	3	D_DG3:C32_R	-0.481	-0.239	-0.628	10.088	-5.217	5.607
1	4	D_DG4:C31_R	-0.601	-0.388	-0.763	-3.803	-6.519	4.84
1	7	D_DG7:C28_R	0.083	0.072	-0.362	-8.363	-6.002	4.522
1	11	D_DG11:C24_R	0.37	-0.058	-0.537	-4.331	-4.066	1.251
1	18	D_DG18:C17_R	-0.17	-0.242	-0.764	-5.777	-2.264	-2.597
1	2	D_DT2:A33_R	-0.636	-0.074	-0.31	5.872	2.839	7.098
1	5	D_DT5:A30_R	-0.55	-0.036	-0.477	5.814	-8.772	6.967
1	8	D_DT8:A27_R	-0.698	0.102	-0.446	6.552	-4.272	-1.79
1	10	D_DT10:A25_R	-0.538	0.017	-0.433	9.381	-2.291	-1.272
1	14	D_DT14:A21_R	-0.679	0.139	-0.578	15.862	-16.321	-11.304
1	16	D_DT16:A19_R	-0.384	-0.201	-0.511	10.928	-5.674	1.193
1	19	D_DT19:A16_R	0.041	-0.039	-0.962	4.863	-5.35	3.342
1	20	D_DT20:A15_R	-0.125	-0.066	-0.529	2.727	-3.694	1.901

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.