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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA2191
PDB ID:
4B3P
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
9
D_DA9:U26_R
0.851
0.17
-0.424
-4.678
0.203
-0.9
1
15
D_DA15:U20_R
-0.311
-0.057
-0.499
-4.002
-5.426
-2.544
1
17
D_DA17:U18_R
0.386
-0.177
-0.651
-0.763
-7.956
0.572
1
21
D_DA21:U14_R
0.589
0.873
0.026
-4.294
-16.237
13.158
1
6
D_DC6:G29_R
0.427
-0.05
-0.191
5.819
-5.15
2.568
1
12
D_DC12:G23_R
-0.591
0.194
-0.565
11.959
2.782
-0.77
1
13
D_DC13:G22_R
0.613
-0.145
-0.278
13.842
-7.38
1.047
1
1
D_DG1:C34_R
-0.594
-0.257
-0.73
-1.421
1.259
5.086
1
3
D_DG3:C32_R
-0.481
-0.239
-0.628
10.088
-5.217
5.607
1
4
D_DG4:C31_R
-0.601
-0.388
-0.763
-3.803
-6.519
4.84
1
7
D_DG7:C28_R
0.083
0.072
-0.362
-8.363
-6.002
4.522
1
11
D_DG11:C24_R
0.37
-0.058
-0.537
-4.331
-4.066
1.251
1
18
D_DG18:C17_R
-0.17
-0.242
-0.764
-5.777
-2.264
-2.597
1
2
D_DT2:A33_R
-0.636
-0.074
-0.31
5.872
2.839
7.098
1
5
D_DT5:A30_R
-0.55
-0.036
-0.477
5.814
-8.772
6.967
1
8
D_DT8:A27_R
-0.698
0.102
-0.446
6.552
-4.272
-1.79
1
10
D_DT10:A25_R
-0.538
0.017
-0.433
9.381
-2.291
-1.272
1
14
D_DT14:A21_R
-0.679
0.139
-0.578
15.862
-16.321
-11.304
1
16
D_DT16:A19_R
-0.384
-0.201
-0.511
10.928
-5.674
1.193
1
19
D_DT19:A16_R
0.041
-0.039
-0.962
4.863
-5.35
3.342
1
20
D_DT20:A15_R
-0.125
-0.066
-0.529
2.727
-3.694
1.901
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.