A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: NA2191  PDB ID: 4B3P 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
19D_DA9:U26_R0.8510.17-0.424-4.6780.203-0.9
115D_DA15:U20_R-0.311-0.057-0.499-4.002-5.426-2.544
117D_DA17:U18_R0.386-0.177-0.651-0.763-7.9560.572
121D_DA21:U14_R0.5890.8730.026-4.294-16.23713.158
16D_DC6:G29_R0.427-0.05-0.1915.819-5.152.568
112D_DC12:G23_R-0.5910.194-0.56511.9592.782-0.77
113D_DC13:G22_R0.613-0.145-0.27813.842-7.381.047
11D_DG1:C34_R-0.594-0.257-0.73-1.4211.2595.086
13D_DG3:C32_R-0.481-0.239-0.62810.088-5.2175.607
14D_DG4:C31_R-0.601-0.388-0.763-3.803-6.5194.84
17D_DG7:C28_R0.0830.072-0.362-8.363-6.0024.522
111D_DG11:C24_R0.37-0.058-0.537-4.331-4.0661.251
118D_DG18:C17_R-0.17-0.242-0.764-5.777-2.264-2.597
12D_DT2:A33_R-0.636-0.074-0.315.8722.8397.098
15D_DT5:A30_R-0.55-0.036-0.4775.814-8.7726.967
18D_DT8:A27_R-0.6980.102-0.4466.552-4.272-1.79
110D_DT10:A25_R-0.5380.017-0.4339.381-2.291-1.272
114D_DT14:A21_R-0.6790.139-0.57815.862-16.321-11.304
116D_DT16:A19_R-0.384-0.201-0.51110.928-5.6741.193
119D_DT19:A16_R0.041-0.039-0.9624.863-5.353.342
120D_DT20:A15_R-0.125-0.066-0.5292.727-3.6941.901

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.