4B3Q: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: NA2192 PDB ID: 4B3Q

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	1	D_DA3:U26_R	0.176	-0.115	0.129	-13.199	-2.719	2.838
1	7	D_DA9:U20_R	0.37	-0.116	-0.018	-3.364	-8.116	1.897
1	9	D_DA11:U18_R	-0.078	-0.016	-0.471	-9.255	-7.23	-1.69
1	13	D_DA15:U14_R	-0.22	-0.231	-0.256	-1.61	-4.85	0.191
1	4	D_DC6:G23_R	0.582	-0.082	-0.451	10.211	-7.323	5.203
1	5	D_DC7:G22_R	0.149	0.022	-0.43	2.022	-0.642	4.951
1	20	D_DC22:G7_R	0.761	-0.246	-0.717	2.261	-6.345	-3.861
1	21	D_DC23:G6_R	0.005	-0.001	-0.527	5.87	1.811	-0.815
1	3	D_DG5:C24_R	0.251	-0.068	-0.287	8.881	-3.05	1.59
1	10	D_DG12:C17_R	0.446	0.116	-0.251	-0.951	-3.789	4.575
1	16	D_DG18:C11_R	0.005	-0.023	-0.271	-7.353	-3.3	1.567
1	18	D_DG20:C9_R	-0.375	-0.091	-0.438	-4.8	-0.053	0.644
1	19	D_DG21:C8_R	0.427	-0.047	-0.858	-8.476	-6.181	-2.871
1	2	D_DT4:A25_R	-0.421	-0.011	-0.023	14.736	-2.271	2.394
1	6	D_DT8:A21_R	-0.15	-0.034	-0.674	9.5	-5.271	5.732
1	8	D_DT10:A19_R	0.322	-0.028	-0.285	3.434	-9.272	-0.679
1	11	D_DT13:A16_R	0.463	-0.131	-0.273	3.814	-4.649	-1.057
1	12	D_DT14:A15_R	0.533	-0.251	-0.366	5.652	1.97	-5.917
1	14	D_DT16:A13_R	0.371	-0.253	0.149	8.619	-7.278	1.126
1	15	D_DT17:A12_R	-0.119	-0.075	-0.452	7.19	-11.781	0.76
1	17	D_DT19:A10_R	-0.205	-0.097	-0.277	5.167	-6.363	-2.616

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.