A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA2192  PDB ID: 4B3Q 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11D_DA3:U26_R0.176-0.1150.129-13.199-2.7192.838
17D_DA9:U20_R0.37-0.116-0.018-3.364-8.1161.897
19D_DA11:U18_R-0.078-0.016-0.471-9.255-7.23-1.69
113D_DA15:U14_R-0.22-0.231-0.256-1.61-4.850.191
14D_DC6:G23_R0.582-0.082-0.45110.211-7.3235.203
15D_DC7:G22_R0.1490.022-0.432.022-0.6424.951
120D_DC22:G7_R0.761-0.246-0.7172.261-6.345-3.861
121D_DC23:G6_R0.005-0.001-0.5275.871.811-0.815
13D_DG5:C24_R0.251-0.068-0.2878.881-3.051.59
110D_DG12:C17_R0.4460.116-0.251-0.951-3.7894.575
116D_DG18:C11_R0.005-0.023-0.271-7.353-3.31.567
118D_DG20:C9_R-0.375-0.091-0.438-4.8-0.0530.644
119D_DG21:C8_R0.427-0.047-0.858-8.476-6.181-2.871
12D_DT4:A25_R-0.421-0.011-0.02314.736-2.2712.394
16D_DT8:A21_R-0.15-0.034-0.6749.5-5.2715.732
18D_DT10:A19_R0.322-0.028-0.2853.434-9.272-0.679
111D_DT13:A16_R0.463-0.131-0.2733.814-4.649-1.057
112D_DT14:A15_R0.533-0.251-0.3665.6521.97-5.917
114D_DT16:A13_R0.371-0.2530.1498.619-7.2781.126
115D_DT17:A12_R-0.119-0.075-0.4527.19-11.7810.76
117D_DT19:A10_R-0.205-0.097-0.2775.167-6.363-2.616

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.