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As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA3357  PDB ID: 4CN3 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11E_DA3:DT15_F0.114-0.078-0.077.0371.146-4.032
16E_DA8:DT10_F-0.018-0.1930.0314.595-21.7692.667
17E_DA9:DT9_F-0.7260.198-0.075.127-21.4633.869
18E_DA10:DT8_F0.338-0.0990.3121.876-20.446-2.608
113E_DA15:DT3_F-0.069-0.1770.3125.963-13.6562.351
15E_DC7:DG11_F0.297-0.176-0.1558.0980.4852.062
112E_DC14:DG4_F0.235-0.167-0.3990.839-0.2591.211
114E_DC16:DG2_F0.177-0.184-0.3119.75-3.379-0.903
12E_DG4:DC14_F-0.594-0.154-0.23-14.506-15.5392.296
19E_DG11:DC7_F-0.294-0.1870.162-11.967-28.3683.298
13E_DT5:DA13_F0.409-0.0420.045-14.918-5.003-3.44
14E_DT6:DA12_F-0.521-0.0860.034-2.399-7.7273.115
110E_DT12:DA6_F-0.09-0.0860.246-19.239-10.9394.411
111E_DT13:DA5_F0.021-0.187-0.055-5.923-8.4474.79
115G_DA3:DT15_H0.3870.0260.0167.388-3.078-5.41
120G_DA8:DT10_H0.249-0.3290.05915.992-23.7370.924
121G_DA9:DT9_H-0.3910.1550.08711.855-19.7685.335
122G_DA10:DT8_H-0.042-0.22-0.028-1.206-21.703-2.364
127G_DA15:DT3_H0.279-0.2690.2569.68-9.253-1.49
119G_DC7:DG11_H-0.087-0.12-0.46112.0063.470.99
126G_DC14:DG4_H0.338-0.282-0.291-0.2310.574-0.914
128G_DC16:DG2_H0.325-0.222-0.2710.397-3.896-1.189
116G_DG4:DC14_H-0.806-0.278-0.229-13.79-12.2672.079
123G_DG11:DC7_H-0.451-0.206-0.005-16.865-28.3386.182
117G_DT5:DA13_H0.125-0.394-0.042-14.532-7.47-1.924
118G_DT6:DA12_H-0.229-0.091-0.057-4.039-10.2354.101
124G_DT12:DA6_H-0.378-0.1140.135-18.389-11.1172.134
125G_DT13:DA5_H-0.328-0.231-0.26-5.693-9.2123.207

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.