A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA1597  PDB ID: 4DSE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
15B_DA25:DT8_C0.157-0.099-0.113-14.882-12.547-0.221
11B_DC21:DG12_C0.479-0.2660.665-17.085-26.8575.08
12B_DC22:DG11_C0.069-0.1170.493-13.021-7.468-1.216
16B_DC26:DG7_C0.244-0.011-0.192-5.7565.6263.291
18B_DC28:DG5_C0.264-0.089-0.06312.295-6.4122.639
14B_DG24:DC9_C-0.339-0.153-0.172-4.384-18.7721.344
13B_DT23:DA10_C-0.143-0.057-0.056-5.276-11.097-0.702
17B_DT27:DA6_C0.037-0.139-0.0858.715-7.865.037
113E_DA25:DT8_F0.225-0.064-0.196-16.487-12.107-0.678
19E_DC21:DG12_F0.231-0.1460.419-15.396-22.4863.306
110E_DC22:DG11_F0.061-0.1160.51-13.171-5.637-1.298
114E_DC26:DG7_F0.253-0.037-0.066-4.5396.9591.617
116E_DC28:DG5_F0.254-0.138-0.01112.131-7.2671.239
112E_DG24:DC9_F-0.311-0.133-0.195-4.559-16.4511.215
111E_DT23:DA10_F-0.127-0.0590.106-8.652-10.487-1.357
115E_DT27:DA6_F0.097-0.168-0.0718.206-8.8142.667

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.