A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
Search for released structures

NDB ID: NA1597  PDB ID: 4DSE 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
15BB_DA25DC26:DG7DT8_CC0.402-0.543.2382.1835.17532.662-1.802-0.3443.1389.117-3.84633.128
11BB_DC21DC22:DG11DG12_CC-0.786-0.1563.2131.969.67532.638-1.7611.6442.99516.744-3.39234.06
12BB_DC22DT23:DA10DG11_CC-0.299-0.2073.0774.669-0.62333.295-0.2631.2313.012-1.08-8.09833.617
16BB_DC26DT27:DA6DG7_CC0.508-1.1383.148-4.1068.03431.145-3.33-1.572.69114.5847.45332.395
14BB_DG24DA25:DT8DC9_CC-0.189-0.0853.448-2.619-1.42139.9590.047-0.043.454-2.0753.82640.066
13BB_DT23DG24:DC9DA10_CC0.5680.8743.363-1.13910.92332.466-0.358-1.1583.44818.8751.96834.226
17BB_DT27DC28:DG5DA6_CC-0.356-1.6273.4290.4528.57425.592-5.6090.8762.74318.698-0.98526.971
112EE_DA25DC26:DG7DT8_FF0.407-0.6073.1470.5715.87332.971-1.97-0.6173.00410.246-0.99633.48
18EE_DC21DC22:DG11DG12_FF-0.651-0.223.294-0.2328.78233.234-1.7471.0663.1415.0290.39734.344
19EE_DC22DT23:DA10DG11_FF-0.403-0.1783.1494.143-0.06833.947-0.2921.3113.08-0.117-7.06234.192
113EE_DC26DT27:DA6DG7_FF0.467-1.2463.204-2.9255.90731.446-3.247-1.3382.87410.755.32532.112
111EE_DG24DA25:DT8DC9_FF-0.109-0.0533.492-1.66-0.36239.828-0.032-0.0443.494-0.5312.43539.863
110EE_DT23DG24:DC9DA10_FF0.6350.8323.2940.0347.97232.6330.084-1.0943.39713.929-0.0633.566
114EE_DT27DC28:DG5DA6_FF-0.277-1.6233.4030.7068.87125.259-5.710.7742.67919.528-1.55426.757

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.