A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: NA1706  PDB ID: 4ECW 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11T_DA5:DT8_P-0.016-0.1030.5613.7-3.7364.521
14T_DA8:DT5_P0.096-0.198-0.081.906-3.938-0.11
15T_DC9:DG4_P0.247-0.14-0.5112.412-8.8291.183
17T_DC11:DG2_P0.242-0.1020.111-9.485-5.3341.329
13T_DG7:DC6_P-0.257-0.091-0.374-5.666-2.9470.181
16T_DG10:DC3_P-0.443-0.146-0.221-2.735-4.9564.243
12T_DT6:DA7_P0.133-0.0340.1440.855-15.5232.205
18T_DT12:DA1_P-0.129-0.167-0.04514.5871.5652.927

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.