Download
Software
Tools
Education
Standards
About NDB
A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search DNA
Search RNA
Advanced Search
Search for released structures
NDB ID:
NA1706
PDB ID:
4ECW
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
1
T_DA5:DT8_P
-0.016
-0.103
0.561
3.7
-3.736
4.521
1
4
T_DA8:DT5_P
0.096
-0.198
-0.08
1.906
-3.938
-0.11
1
5
T_DC9:DG4_P
0.247
-0.14
-0.51
12.412
-8.829
1.183
1
7
T_DC11:DG2_P
0.242
-0.102
0.111
-9.485
-5.334
1.329
1
3
T_DG7:DC6_P
-0.257
-0.091
-0.374
-5.666
-2.947
0.181
1
6
T_DG10:DC3_P
-0.443
-0.146
-0.221
-2.735
-4.956
4.243
1
2
T_DT6:DA7_P
0.133
-0.034
0.144
0.855
-15.523
2.205
1
8
T_DT12:DA1_P
-0.129
-0.167
-0.045
14.587
1.565
2.927
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.