4ED0: Base Pair Morphology Parameters

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As of 18-May-2022 number of released structures: 12082

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NDB ID: NA1710 PDB ID: 4ED0

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	T_DA8:DT5_P	0.09	-0.072	0.17	4.626	-3.75	0.929
1	4	T_DC9:DG4_P	0.311	-0.118	-0.278	11.055	-7.328	0.94
1	6	T_DC11:DG2_P	0.141	-0.09	0.201	-5.985	-2.884	0.253
1	2	T_DG7:DC6_P	-0.07	-0.124	-0.235	-6.313	-2.862	-1.399
1	5	T_DG10:DC3_P	-0.477	-0.192	-0.173	-5.749	-7.896	4.357
1	1	T_DT6:DA7_P	0.109	-0.037	0.216	-1.718	-15.009	3.957
1	7	T_DT12:DA1_P	-0.149	-0.123	-0.135	15.95	-2.047	4.466

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.