4ED0: Base Pair Morphology Step Parameters

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As of 31-May-2023 number of released structures: 12820

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NDB ID: NA1710 PDB ID: 4ED0

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	3	TT_DA8DC9:DG4DT5_PP	0.355	-0.631	3.238	3.764	1.361	32.275	-1.362	0.019	3.229	2.437	-6.739	32.515
1	4	TT_DC9DG10:DC3DG4_PP	-0.443	-0.643	3.786	-4.429	7.729	32.779	-2.522	-0.054	3.574	13.39	7.674	33.936
1	6	TT_DC11DT12:DA1DG2_PP	0.258	0.192	2.967	-0.424	3.559	25.626	-0.47	-0.683	2.961	7.974	0.949	25.871
1	2	TT_DG7DA8:DT5DC6_PP	-0.652	-0.486	3.148	-2.299	-0.228	34.136	-0.791	0.757	3.187	-0.389	3.911	34.212
1	5	TT_DG10DC11:DG2DC3_PP	-0.686	-0.576	3.436	-3.742	-0.637	36.842	-0.816	0.547	3.496	-1.004	5.901	37.031
1	1	TT_DT6DG7:DC6DA7_PP	-0.426	-1.153	3.397	4.901	9.132	28.996	-3.921	1.742	2.805	17.547	-9.416	30.756

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.