A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: NA1714  PDB ID: 4ED6 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12T_DA5:DT8_P-0.317-0.047-0.349-18.869-0.2046.58
15T_DA8:DT5_P0.638-0.237-0.155-0.291-3.9130.018
16T_DC9:DG4_P0.028-0.325-0.2931.614-3.5090.699
18T_DC11:DG2_P0.251-0.1360.012-3.068-4.231-0.107
14T_DG7:DC6_P-0.23-0.065-0.032-8.184-6.1011.663
17T_DG10:DC3_P-0.285-0.225-0.266-5.322-3.9880.732
11T_DT4:DA9_P3.984-2.131-1.937-8.064-61.942-90.459
13T_DT6:DA7_P-0.0440.0220.247-4.309-14.5881.728
19T_DT12:DA1_P-0.079-0.018-0.31619.0882.316.217

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.