4ED6: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA1714 PDB ID: 4ED6

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	T_DA5:DT8_P	-0.317	-0.047	-0.349	-18.869	-0.204	6.58
1	5	T_DA8:DT5_P	0.638	-0.237	-0.155	-0.291	-3.913	0.018
1	6	T_DC9:DG4_P	0.028	-0.325	-0.293	1.614	-3.509	0.699
1	8	T_DC11:DG2_P	0.251	-0.136	0.012	-3.068	-4.231	-0.107
1	4	T_DG7:DC6_P	-0.23	-0.065	-0.032	-8.184	-6.101	1.663
1	7	T_DG10:DC3_P	-0.285	-0.225	-0.266	-5.322	-3.988	0.732
1	1	T_DT4:DA9_P	3.984	-2.131	-1.937	-8.064	-61.942	-90.459
1	3	T_DT6:DA7_P	-0.044	0.022	0.247	-4.309	-14.588	1.728
1	9	T_DT12:DA1_P	-0.079	-0.018	-0.316	19.088	2.31	6.217

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.