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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA1714
PDB ID:
4ED6
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
T_DA5:DT8_P
-0.317
-0.047
-0.349
-18.869
-0.204
6.58
1
5
T_DA8:DT5_P
0.638
-0.237
-0.155
-0.291
-3.913
0.018
1
6
T_DC9:DG4_P
0.028
-0.325
-0.293
1.614
-3.509
0.699
1
8
T_DC11:DG2_P
0.251
-0.136
0.012
-3.068
-4.231
-0.107
1
4
T_DG7:DC6_P
-0.23
-0.065
-0.032
-8.184
-6.101
1.663
1
7
T_DG10:DC3_P
-0.285
-0.225
-0.266
-5.322
-3.988
0.732
1
1
T_DT4:DA9_P
3.984
-2.131
-1.937
-8.064
-61.942
-90.459
1
3
T_DT6:DA7_P
-0.044
0.022
0.247
-4.309
-14.588
1.728
1
9
T_DT12:DA1_P
-0.079
-0.018
-0.316
19.088
2.31
6.217
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.