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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA1714
PDB ID:
4ED6
 
Base Pair Morphology Step Parameters
CSV Format
Model Number
Step Number
Step Name
Shift
Slide
Rise
Tilt
Roll
Twist
X-Displacement
Y-Displacement
Helical Rise
Inclination
Tip
Helical Twist
1
2
TT_DA5DT6:DA7DT8_PP
0.453
-0.586
3.088
-6.73
1.892
24.713
-1.81
-2.767
2.815
4.312
15.337
25.668
1
5
TT_DA8DC9:DG4DT5_PP
0.677
-1.252
3.396
2.856
1.579
26.328
-3.16
-0.693
3.37
3.45
-6.24
26.526
1
6
TT_DC9DG10:DC3DG4_PP
-0.381
-0.743
3.686
-1.882
2.876
36.25
-1.637
0.316
3.633
4.609
3.016
36.407
1
8
TT_DC11DT12:DA1DG2_PP
0.6
0.052
2.971
0.34
3.566
25.734
-0.779
-1.25
2.958
7.956
-0.758
25.978
1
4
TT_DG7DA8:DT5DC6_PP
-0.304
-0.769
3.29
1.811
3.438
35.149
-1.77
0.766
3.184
5.672
-2.987
35.356
1
7
TT_DG10DC11:DG2DC3_PP
-0.277
-0.731
3.333
0.884
-0.924
35.588
-1.057
0.584
3.342
-1.512
-1.446
35.61
1
1
TT_DT4DA5:DT8DA9_PP
4.49
-0.723
3.12
10.152
-27.169
14.815
5.373
-5.534
3.433
-59.489
-22.228
32.496
1
3
TT_DT6DG7:DC6DA7_PP
-0.058
-1.312
3.321
4.346
10.121
29.201
-4.276
0.895
2.692
19.233
-8.258
31.167
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.