4ED6: Base Pair Morphology Step Parameters

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NDB ID: NA1714 PDB ID: 4ED6

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	TT_DA5DT6:DA7DT8_PP	0.453	-0.586	3.088	-6.73	1.892	24.713	-1.81	-2.767	2.815	4.312	15.337	25.668
1	5	TT_DA8DC9:DG4DT5_PP	0.677	-1.252	3.396	2.856	1.579	26.328	-3.16	-0.693	3.37	3.45	-6.24	26.526
1	6	TT_DC9DG10:DC3DG4_PP	-0.381	-0.743	3.686	-1.882	2.876	36.25	-1.637	0.316	3.633	4.609	3.016	36.407
1	8	TT_DC11DT12:DA1DG2_PP	0.6	0.052	2.971	0.34	3.566	25.734	-0.779	-1.25	2.958	7.956	-0.758	25.978
1	4	TT_DG7DA8:DT5DC6_PP	-0.304	-0.769	3.29	1.811	3.438	35.149	-1.77	0.766	3.184	5.672	-2.987	35.356
1	7	TT_DG10DC11:DG2DC3_PP	-0.277	-0.731	3.333	0.884	-0.924	35.588	-1.057	0.584	3.342	-1.512	-1.446	35.61
1	1	TT_DT4DA5:DT8DA9_PP	4.49	-0.723	3.12	10.152	-27.169	14.815	5.373	-5.534	3.433	-59.489	-22.228	32.496
1	3	TT_DT6DG7:DC6DA7_PP	-0.058	-1.312	3.321	4.346	10.121	29.201	-4.276	0.895	2.692	19.233	-8.258	31.167

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.