4F4W: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 31-May-2023 number of released structures: 12820

Search for released structures

NDB ID: NA1801 PDB ID: 4F4W

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	P_DA4:DT15_T	0.088	-0.173	0.112	2.19	-10.847	-1.719
1	8	P_DA8:DT11_T	0.016	-0.174	-0.114	2.46	-10.208	0.598
1	3	P_DC3:DG16_T	0.297	-0.183	-0.041	4.339	-8.399	-1.077
1	5	P_DC5:DG14_T	0.253	-0.164	-0.086	6.316	-9.981	1.223
1	10	P_DC10:DG9_T	0.211	-0.185	-0.013	-5.455	-4.089	0.215
1	13	P_DC13:DG6_T	-0.027	-0.138	0.125	-0.494	-12.565	-0.702
1	1	P_DG1:DC18_T	-0.311	-0.032	-0.114	-6.902	-6.696	0.352
1	2	P_DG2:DC17_T	-0.149	-0.153	0.206	8.199	-8.399	3.004
1	7	P_DG7:DC12_T	-0.195	-0.068	-0.227	-3.629	-3.313	0.267
1	11	P_DG11:DC8_T	-0.018	-0.174	0.226	10.598	3.584	-0.553
1	12	P_DG12:DC7_T	-0.207	-0.24	0.165	7.453	-13.88	-3.427
1	6	P_DT6:DA13_T	0.096	-0.155	0.123	-11.854	-14.769	3.018
1	9	P_DT9:DA10_T	0.02	-0.097	-0.298	3.026	-11.694	0.912
1	17	E_DA4:DT15_F	-0.051	-0.144	0.156	2.578	-10.809	-2.745
1	21	E_DA8:DT11_F	0.014	-0.143	-0.096	1.902	-10.171	-0.256
1	16	E_DC3:DG16_F	0.274	-0.149	0.185	1.725	-8.456	-0.442
1	18	E_DC5:DG14_F	0.258	-0.209	0.004	6.158	-8.261	-0.055
1	23	E_DC10:DG9_F	0.173	-0.23	-0.04	-5.141	-4.558	-0.727
1	26	E_DC13:DG6_F	-0.067	-0.056	0.027	1.166	-12.735	0.41
1	14	E_DG1:DC18_F	-0.252	-0.039	-0.02	-5.553	-7.156	0.28
1	15	E_DG2:DC17_F	-0.139	-0.179	0.237	8.163	-7.918	2.443
1	20	E_DG7:DC12_F	-0.196	-0.155	-0.324	-4.768	-3.669	0.581
1	24	E_DG11:DC8_F	-0.057	-0.13	0.225	11.427	3.238	-1.293
1	25	E_DG12:DC7_F	-0.192	-0.255	0.236	6.573	-14.186	-3.288
1	19	E_DT6:DA13_F	0.034	-0.226	0.17	-11.132	-14.001	3.808
1	22	E_DT9:DA10_F	0.021	-0.115	-0.252	3.102	-12.79	1.574

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.