4F4W: Base Pair Morphology Step Parameters

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NDB ID: NA1801 PDB ID: 4F4W

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	4	PP_DA4DC5:DG14DT15_TT	0.555	-0.695	3.196	1.758	1.575	29.406	-1.692	-0.724	3.182	3.096	-3.457	29.499
1	8	PP_DA8DT9:DA10DT11_TT	-0.32	-0.498	3.311	1.3	-1.454	32.857	-0.627	0.79	3.315	-2.567	-2.295	32.913
1	3	PP_DC3DA4:DT15DG16_TT	-0.077	-0.009	3.377	0.037	10.227	33.098	-1.645	0.136	3.232	17.44	-0.063	34.599
1	5	PP_DC5DT6:DA13DG14_TT	0.454	-0.575	3.704	1.81	3.397	35.915	-1.469	-0.443	3.654	5.49	-2.925	36.114
1	10	PP_DC10DG11:DC8DG9_TT	0.604	0.081	3.145	-5.323	2.331	27.546	-0.349	-2.421	2.975	4.827	11.023	28.141
1	1	PP_DG1DG2:DC17DC18_TT	0.635	0.543	3.004	-3.098	7.084	30.346	-0.237	-1.72	2.974	13.264	5.8	31.294
1	2	PP_DG2DC3:DG16DC17_TT	-1.046	-0.093	3.393	-0.847	0.666	36.99	-0.24	1.529	3.413	1.05	1.335	37.005
1	7	PP_DG7DA8:DT11DC12_TT	-0.116	-0.145	3.298	-0.902	4.371	30.378	-1.138	0.041	3.248	8.285	1.71	30.696
1	11	PP_DG11DG12:DC7DC8_TT	-1.204	-0.257	3.537	-4.872	4.895	39.316	-0.997	1.148	3.599	7.208	7.174	39.894
1	12	PP_DG12DC13:DG6DC7_TT	-0.702	-0.623	3.496	-1.926	-3.102	30.778	-0.517	0.911	3.577	-5.819	3.613	30.989
1	6	PP_DT6DG7:DC12DA13_TT	0.249	1.24	3.267	3.711	6.774	37.601	1.01	0.102	3.439	10.376	-5.684	38.358
1	9	PP_DT9DC10:DG9DA10_TT	0.075	-0.273	3.592	-2.736	0.372	38.939	-0.458	-0.474	3.576	0.557	4.099	39.033
1	16	EE_DA4DC5:DG14DT15_FF	0.646	-0.729	3.213	1.337	2.24	31.278	-1.759	-0.949	3.178	4.145	-2.474	31.384
1	20	EE_DA8DT9:DA10DT11_FF	-0.251	-0.514	3.298	0.88	-1.37	32.594	-0.674	0.602	3.309	-2.44	-1.568	32.633
1	15	EE_DC3DA4:DT15DG16_FF	-0.188	-0.107	3.287	1.718	8.083	31.485	-1.605	0.635	3.149	14.583	-3.1	32.525
1	17	EE_DC5DT6:DA13DG14_FF	0.473	-0.633	3.685	1.598	2.923	34.781	-1.549	-0.517	3.639	4.876	-2.665	34.936
1	22	EE_DC10DG11:DC8DG9_FF	0.611	0.098	3.159	-4.942	2.285	27.824	-0.302	-2.334	3.006	4.695	10.155	28.342
1	13	EE_DG1DG2:DC17DC18_FF	0.564	0.476	3.029	-3.075	7.714	30.63	-0.458	-1.562	2.989	14.277	5.691	31.71
1	14	EE_DG2DC3:DG16DC17_FF	-1.06	-0.174	3.471	-2.793	-0.076	36.779	-0.263	1.269	3.539	-0.12	4.419	36.881
1	19	EE_DG7DA8:DT11DC12_FF	-0.175	-0.152	3.257	-2.122	4.544	30.529	-1.159	-0.08	3.206	8.557	3.996	30.928
1	23	EE_DG11DG12:DC7DC8_FF	-1.186	-0.209	3.538	-5.877	4.868	39.991	-0.897	0.987	3.62	7.04	8.499	40.683
1	24	EE_DG12DC13:DG6DC7_FF	-0.652	-0.644	3.447	-0.515	-3.021	29.957	-0.583	1.142	3.504	-5.825	0.993	30.11
1	18	EE_DT6DG7:DC12DA13_FF	0.181	1.191	3.276	5.145	7.033	37.967	0.901	0.377	3.429	10.639	-7.784	38.918
1	21	EE_DT9DC10:DG9DA10_FF	0.024	-0.311	3.587	-2.676	-0.499	38.966	-0.399	-0.389	3.581	-0.747	4.006	39.057

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.