A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA1771  PDB ID: 4F5R 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13D_DC3:DG3_T-0.097-0.160.025-7.058-12.4460.011
11D_DG1:DC5_T-0.509-0.24-0.605-16.9250.609-0.194
14D_DG4:DC2_T0.135-0.1990.53913.898-9.4590.445
15D_DG5:DC1_T-0.268-0.2160.23810.993-8.731-6.118
12D_DT2:DA4_T-0.332-0.0150.101-4.366-6.489-1.871
110P_DA5:DT12_T0.07-0.1580.019-6.173-10.6420.496
17P_DC2:DG15_T0.016-0.245-0.0190.522-12.3560.166
113P_DC8:DG9_T0.096-0.120.03-5.54-8.978-1.205
115P_DC10:DG7_T0.407-0.187-0.021.133-8.3842.449
16P_DG1:DC16_T-0.112-0.3190.006-3.022-7.766-2.117
19P_DG4:DC13_T-0.239-0.1230.1016.131-11.866-0.146
112P_DG7:DC10_T-0.2250.07-0.014-7.03-6.5031.78
114P_DG9:DC8_T-0.188-0.040.1021.536-11.2711.207
18P_DT3:DA14_T-0.519-0.1830.348-2.143-7.1862.751
111P_DT6:DA11_T-0.491-0.091-0.0141.308-7.48-0.818
118C_DC3:DG3_F-0.2820.2360.635-7.237-13.0198.577
116C_DG1:DC5_F-0.0160.005-0.394-14.2861.953-1.586
119C_DG4:DC2_F0.137-0.121-0.393-3.145-12.705-8.215
120C_DG5:DC1_F1.005-0.2680.2483.501-9.073-2.683
117C_DT2:DA4_F-0.272-0.2060.278-6.571-3.566-3.6
125G_DA5:DT12_F-0.167-0.132-0.045-0.061-18.2424.428
122G_DC2:DG15_F0.325-0.2160.35-8.645-9.859-2.304
128G_DC8:DG9_F-0.077-0.249-0.4020.6182.044-1.874
130G_DC10:DG7_F0.315-0.130.029-2.9020.5950.57
121G_DG1:DC16_F-0.269-0.2470.2270.705-8.0833.387
124G_DG4:DC13_F-0.168-0.2140.4190.844-9.1761.064
127G_DG7:DC10_F-0.26-0.2130.0-3.629-6.358-0.594
129G_DG9:DC8_F-0.2310.033-0.533-7.975-3.1816.206
123G_DT3:DA14_F-0.3-0.1680.327-6.045-11.1531.439
126G_DT6:DA11_F-0.093-0.0480.0564.188-9.3580.397

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.