A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: NA1771  PDB ID: 4F5R 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13DD_DC3DG4:DC2DG3_TT-0.0431.3313.134-2.4862.87933.9981.82-0.3093.2274.9044.23634.204
11DD_DG1DT2:DA4DC5_TT-0.886-0.3053.035-4.537-1.58429.181-0.2790.8213.146-3.1178.92929.566
14DD_DG4DG5:DC1DC2_TT-0.413-0.1243.2220.7122.7535.146-0.6050.7863.1954.544-1.17735.257
12DD_DT2DC3:DG3DA4_TT0.531-0.2263.1633.57-1.08338.673-0.211-0.3743.203-1.631-5.37538.846
19PP_DA5DT6:DA11DT12_TT-0.177-0.6333.115-0.484-2.78128.062-0.6750.2553.164-5.7180.99428.201
16PP_DC2DT3:DA14DG15_TT0.013-0.1493.443-1.8817.33928.046-1.988-0.4593.29114.8053.79429.031
112PP_DC8DG9:DC8DG9_TT0.5910.5873.2260.29713.59133.152-1.053-0.9183.21922.67-0.49535.759
15PP_DG1DC2:DG15DC16_TT-0.636-0.5123.1740.799-0.50932.794-0.8211.2593.165-0.902-1.41532.807
18PP_DG4DA5:DT12DC13_TT-0.282-0.3843.497-2.638-0.76341.481-0.4540.0973.514-1.0763.7241.567
111PP_DG7DC8:DG9DC10_TT0.032-0.4223.2760.494.44830.282-1.6730.0353.1838.457-0.93130.604
113PP_DG9DC10:DG7DC8_TT1.0020.2953.4023.285-7.8836.7621.522-1.1073.344-12.291-5.12437.707
17PP_DT3DG4:DC13DA14_TT0.1030.3913.122.8141.02438.1790.4730.1813.1291.563-4.29438.292
110PP_DT6DG7:DC10DA11_TT0.168-0.0953.41-0.3967.63239.204-1.054-0.2943.33211.2440.58339.914
116CC_DC3DG4:DC2DG3_FF-1.0141.3613.2929.6770.41134.6522.152.9822.9280.673-15.86735.94
114CC_DG1DT2:DA4DC5_FF-0.558-0.3963.125-5.0062.10830.079-1.1550.1013.144.0219.54730.555
117CC_DG4DG5:DC1DC2_FF0.506-0.2943.081-5.27.68637.472-1.323-1.3612.87511.7457.94638.564
115CC_DT2DC3:DG3DA4_FF1.1660.4483.402-0.681-3.51441.5761.011-1.7113.336-4.940.95741.723
122GG_DA5DT6:DA11DT12_FF0.313-0.4663.185-0.770.51131.166-0.961-0.7243.1690.9511.43331.179
119GG_DC2DT3:DA14DG15_FF-0.141-0.2893.2750.6573.89828.747-1.4310.4263.2047.804-1.31629.011
125GG_DC8DG9:DC8DG9_FF1.662-0.5433.8061.4831.67933.36-1.269-2.6033.8432.921-2.5833.433
118GG_DG1DC2:DG15DC16_FF-0.913-0.6863.454-1.3933.88134.194-1.7921.3143.3926.5712.35934.434
121GG_DG4DA5:DT12DC13_FF-0.4550.3463.4381.0943.4935.2210.0280.9173.4415.748-1.80235.404
124GG_DG7DC8:DG9DC10_FF0.499-0.4243.3273.3123.90931.019-1.528-0.293.2847.248-6.14131.429
126GG_DG9DC10:DG7DC8_FF-0.538-0.6853.408-1.1472.23637.684-1.3580.6783.3783.4561.77337.765
120GG_DT3DG4:DC13DA14_FF0.0921.6123.184-0.231-2.25441.5942.495-0.1523.096-3.1710.32441.653
123GG_DT6DG7:DC10DA11_FF0.368-0.4143.431.964.95336.581-1.35-0.3043.3627.839-3.10236.954

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.