4FF2: Base Pair Morphology Parameters

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NDB ID: NA1813 PDB ID: 4FF2

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	C_DA11:DT21_C	0.058	-0.066	-0.275	-13.607	-13.17	2.411
1	3	C_DA12:DT20_C	-0.124	-0.114	0.114	0.848	-0.504	8.299
1	5	C_DC14:DG18_C	0.206	-0.049	-0.341	18.508	7.729	-0.092
1	1	C_DG10:DC22_C	-0.192	0.014	-0.185	-11.441	-2.618	2.879
1	4	C_DG13:DC19_C	-0.155	-0.081	-0.132	-3.0	-5.245	-1.29
1	6	C_DG15:DA17_C	6.334	-4.115	1.42	38.307	-6.533	22.962
1	8	D_DA11:DT21_D	0.024	-0.225	-0.315	-8.968	-13.24	0.804
1	9	D_DA12:DT20_D	0.391	-0.118	-0.098	0.028	-10.296	12.871
1	11	D_DC14:DG18_D	0.043	-0.174	-0.687	18.909	10.674	-0.239
1	7	D_DG10:DC22_D	-0.277	-0.083	-0.268	-9.81	1.079	-2.475
1	10	D_DG13:DC19_D	-0.348	-0.118	0.593	5.208	2.569	-1.984
1	12	D_DG15:DA17_D	6.421	-4.093	1.664	38.256	-8.036	23.357

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.