4FF2: Base Pair Morphology Step Parameters

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NDB ID: NA1813 PDB ID: 4FF2

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	CC_DA11DA12:DT20DT21_CC	0.534	0.352	3.056	-6.373	9.255	29.352	-0.977	-2.108	2.858	17.479	12.035	31.385
1	3	CC_DA12DG13:DC19DT20_CC	-1.952	-0.071	3.31	-1.278	7.25	36.398	-1.102	2.893	3.301	11.463	2.021	37.11
1	5	CC_DC14DG15:DA17DG18_CC	0.881	1.795	3.054	2.478	12.364	52.88	1.211	-0.815	3.399	13.664	-2.738	54.257
1	1	CC_DG10DA11:DT21DC22_CC	-0.584	-0.276	3.455	0.923	1.983	35.167	-0.765	1.109	3.419	3.279	-1.526	35.232
1	4	CC_DG13DC14:DG18DC19_CC	1.042	0.101	2.924	0.583	-1.375	30.603	0.435	-1.869	2.936	-2.604	-1.104	30.639
1	7	DD_DA11DA12:DT20DT21_DD	0.567	0.317	3.145	-2.831	13.315	30.555	-1.607	-1.446	2.962	23.837	5.067	33.384
1	8	DD_DA12DG13:DC19DT20_DD	-1.654	-0.183	3.114	-9.385	1.986	34.683	-0.584	1.317	3.417	3.255	15.382	35.946
1	10	DD_DC14DG15:DA17DG18_DD	0.944	1.743	2.977	-0.543	16.004	52.249	0.945	-1.064	3.331	17.706	0.6	54.482
1	6	DD_DG10DA11:DT21DC22_DD	-0.285	-0.336	3.449	1.649	2.269	35.8	-0.885	0.709	3.405	3.684	-2.678	35.906
1	9	DD_DG13DC14:DG18DC19_DD	1.052	0.098	3.109	9.963	0.77	30.756	0.039	-0.12	3.282	1.405	-18.192	32.301

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.