A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: NA2053  PDB ID: 4HF2 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11C_DA1:DT29_D0.898-0.44-0.2162.903-13.429-5.156
13C_DA3:DT27_D0.138-0.470.45311.638-7.4422.009
14C_DA4:DT26_D0.536-0.2470.3466.851-23.1134.819
15C_DA5:DT25_D1.512-0.2061.3258.745-25.5299.261
19C_DA9:DT21_D0.179-0.6080.5237.504-0.773-1.474
111C_DA11:DT19_D0.069-0.264-0.084-3.0-8.9774.668
113C_DA13:DT17_D0.616-0.0090.25415.845-18.74611.402
120C_DA20:DT10_D-0.204-0.5540.173-4.439-13.123-11.506
17C_DC7:DG23_D0.409-0.1820.0813.583-19.8785.4
18C_DC8:DG22_D0.226-0.6190.244-13.9451.292-2.902
110C_DC10:DG20_D0.914-0.4140.3229.512-9.3971.214
112C_DC12:DG18_D0.066-0.0510.528-5.056-3.8777.524
114C_DG14:DC16_D0.45-0.4920.3873.297-18.429-1.093
118C_DG18:DC12_D-1.175-0.3120.336-0.283-11.64712.829
123C_DG23:DC7_D-0.09-0.4140.581-7.705-29.1663.965
128C_DG28:DC2_D-0.614-0.3820.036-10.46-14.55-4.005
12C_DT2:DA28_D0.857-0.034-0.0749.38-20.869-3.513
16C_DT6:DA24_D-1.176-0.0660.08713.631-20.1762.793
115C_DT15:DA15_D-0.469-0.5080.1540.046-20.149-5.163
116C_DT16:DA14_D-0.29-0.6110.234-4.258-16.692-4.503
117C_DT17:DA13_D-0.179-0.5230.108-15.818-19.2922.854
119C_DT19:DA11_D-0.402-0.3190.38-0.228-9.272-3.062
121C_DT21:DA9_D-0.309-0.4180.247-10.408-9.398-0.294
122C_DT22:DA8_D0.127-0.507-0.0383.822-15.658-1.137
124C_DT24:DA6_D-0.533-0.3070.473-14.385-24.317-2.423
125C_DT25:DA5_D-0.472-0.1810.881-13.765-28.8913.573
126C_DT26:DA4_D-0.286-0.1280.785-17.642-21.1469.782
127C_DT27:DA3_D-0.133-0.2730.088-18.784-6.5474.864
129C_DT29:DA1_D0.424-0.653-0.024-1.35-14.548-1.956

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.