A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: NA2081  PDB ID: 4HJE 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA3:DT19_F0.284-0.073-0.21611.169-12.788-0.319
14E_DA5:DT17_F0.205-0.0970.054-3.591-15.72310.61
15E_DA6:DT16_F0.366-0.3370.1715.333-16.1676.98
19E_DA10:DT12_F1.173-0.447-0.123-6.242-8.873-12.019
111E_DA12:DT10_F2.154-0.180.0773.331-11.1035.496
113E_DA14:DT8_F0.283-0.1610.04314.458-12.066-0.114
115E_DA16:DT6_F0.423-0.094-0.051-5.857-16.3610.571
116E_DA17:DT5_F0.499-0.1840.13.841-15.5498.687
11E_DC2:DG20_F-0.627-0.319-0.026-1.538-11.452-4.701
13E_DC4:DG18_F0.129-0.166-0.4213.934-9.3510.353
114E_DC15:DG7_F0.186-0.057-0.1129.639-11.1473.014
118E_DC19:DG3_F0.083-0.166-0.011-8.824-8.7634.722
119E_DC20:DG2_F-0.353-0.38-0.1657.057-5.790.382
16E_DG7:DC15_F-0.286-0.109-0.19-12.206-9.3412.645
110E_DG11:DC11_F0.511-0.5750.136-12.136-9.983-0.013
112E_DG13:DC9_F0.18-0.286-0.1337.765-13.0461.457
117E_DG18:DC4_F-0.1-0.185-0.173-7.859-9.680.542
17E_DT8:DA14_F-0.285-0.1740.336-14.045-10.106-0.849
18E_DT9:DA13_F-0.036-0.423-0.173-11.814-7.767-4.814
120E_DT21:DA1_F0.0920.412-0.0688.734-12.73113.658

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.