A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 8-Jul-2020 number of released structures: 10846
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NDB ID: NA2081  PDB ID: 4HJE 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12EE_DA3DC4:DG18DT19_FF0.848-0.7973.2551.2733.54129.018-2.334-1.4063.1717.029-2.52729.256
14EE_DA5DA6:DT16DT17_FF-0.2450.0182.99-0.597.51525.189-1.8150.3932.87916.761.31626.275
15EE_DA6DG7:DC15DT16_FF-0.494-0.3873.643-1.685.00339.167-1.2260.5113.5867.4222.49339.507
19EE_DA10DG11:DC11DT12_FF0.126-0.0093.41-3.8190.30224.765-0.114-1.4663.3520.6998.83725.055
111EE_DA12DG13:DC9DT10_FF0.101-0.3873.2011.8856.56421.26-3.3640.4182.94717.228-4.94622.318
113EE_DA14DC15:DG7DT8_FF0.972-1.063.403-0.11-0.66229.285-1.946-1.9473.422-1.3090.21729.293
115EE_DA16DA17:DT5DT6_FF-0.1380.1513.026-1.0717.53124.749-1.6160.0292.94517.0632.42825.874
116EE_DA17DG18:DC4DT5_FF-0.702-0.1753.507-2.5136.00638.773-1.0280.7233.4798.973.75339.295
11EE_DC2DA3:DT19DG20_FF0.3470.7433.1190.9385.532.1260.391-0.463.2079.846-1.67932.594
13EE_DC4DA5:DT17DG18_FF0.6270.2153.6620.9556.00944.746-0.326-0.723.6727.85-1.24845.137
114EE_DC15DA16:DT6DG7_FF0.3910.1653.5764.7267.61145.43-0.505-0.0543.5799.742-6.0546.259
118EE_DC19DC20:DG2DG3_FF-0.3670.273.013-0.2585.89925.347-0.910.753.00113.2150.57826.015
119EE_DC20DT21:DA1DG2_FF0.1191.9233.4561.604-0.54649.6772.33-0.0183.438-0.649-1.90849.704
16EE_DG7DT8:DA14DC15_FF-0.957-1.0983.335-1.729-0.39928.497-2.1331.5353.4-0.8093.50728.551
110EE_DG11DA12:DT10DC11_FF-0.099-0.4813.0185.4425.63537.306-1.3880.7792.8768.691-8.39438.091
112EE_DG13DA14:DT8DC9_FF0.261-0.1843.1790.071-4.234.5330.318-0.4263.18-7.042-0.11934.78
117EE_DG18DC19:DG3DC4_FF-0.368-0.7063.3080.7131.34230.061-1.6350.8563.2652.586-1.37330.099
17EE_DT8DT9:DA13DA14_FF-0.448-0.3273.2613.515-4.05637.5360.0141.1373.224-6.263-5.42837.904
18EE_DT9DA10:DT12DA13_FF-0.6380.0863.287-1.36.19339.059-0.6080.7893.2819.1891.9339.549

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.