4IHT: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA2174 PDB ID: 4IHT

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	E_DA2:DT24_F	0.854	-0.092	-0.686	-4.993	-3.218	-7.283
1	3	E_DA3:DT23_F	0.27	-0.1	0.638	5.551	-17.564	5.743
1	4	E_DA4:DT22_F	0.165	-0.051	0.19	8.816	-15.019	-3.524
1	5	E_DA5:DT21_F	0.106	0.158	-0.085	4.684	-9.843	1.417
1	6	E_DA6:DT20_F	-0.363	-0.278	0.486	-3.373	-12.592	-0.266
1	8	E_DA8:DT18_F	0.788	-0.18	0.379	8.294	0.464	-5.401
1	13	E_DA13:DT13_F	0.408	0.14	0.237	0.147	-19.192	-1.353
1	15	E_DA15:DT11_F	0.108	-0.255	0.49	15.169	-14.238	-9.179
1	19	E_DA19:DT7_F	-0.075	-0.246	-0.266	-3.34	-8.364	-6.283
1	24	E_DA24:DT2_F	0.784	-0.389	-0.449	-3.639	-11.491	2.01
1	9	E_DC9:DG17_F	1.128	0.074	0.206	9.886	-7.008	7.623
1	11	E_DC11:DG15_F	-0.103	-0.065	0.332	-0.23	-13.128	6.499
1	12	E_DC12:DG14_F	-0.27	-0.276	-0.112	-1.465	1.504	4.122
1	16	E_DG16:DC10_F	0.001	-0.114	0.217	2.54	-3.881	0.282
1	17	E_DG17:DC9_F	-0.06	-0.21	0.015	-7.823	-12.168	-0.179
1	1	E_DT1:DA25_F	-0.208	-0.191	0.033	-3.991	-20.138	2.097
1	7	E_DT7:DA19_F	-0.361	-0.139	0.553	-1.315	-10.077	-5.417
1	10	E_DT10:DA16_F	-0.111	-0.21	-0.199	4.92	-13.338	1.268
1	14	E_DT14:DA12_F	0.204	-0.558	0.186	-1.596	-0.781	0.89
1	18	E_DT18:DA8_F	0.189	-0.302	-0.021	0.803	-4.546	-2.482
1	20	E_DT20:DA6_F	0.023	-0.109	0.426	-5.417	-9.797	1.701
1	21	E_DT21:DA5_F	-0.104	-0.128	0.406	-15.551	-20.558	-2.313
1	22	E_DT22:DA4_F	0.04	-0.178	0.284	-10.092	-14.798	-4.572
1	23	E_DT23:DA3_F	-0.323	0.063	0.098	-4.878	-14.382	3.574
1	25	E_DT25:DA1_F	0.152	0.623	0.109	2.957	-10.643	30.687
1	27	G_DA2:DT24_H	1.144	0.164	0.555	2.611	-17.093	-8.067
1	28	G_DA3:DT23_H	0.011	0.147	0.096	9.56	-11.307	7.263
1	29	G_DA4:DT22_H	0.386	0.366	0.315	-0.309	-19.143	-1.825
1	30	G_DA5:DT21_H	0.675	-0.134	0.163	2.31	-9.796	-4.144
1	31	G_DA6:DT20_H	-0.035	-0.155	0.433	-0.995	-10.956	1.318
1	33	G_DA8:DT18_H	0.12	-0.187	0.349	8.296	5.329	-2.499
1	38	G_DA13:DT13_H	0.824	0.001	0.077	-6.378	-17.242	-4.702
1	40	G_DA15:DT11_H	0.309	-0.18	0.469	6.992	-13.52	-7.199
1	44	G_DA19:DT7_H	-0.128	-0.201	-0.091	1.267	-14.087	-2.936
1	49	G_DA24:DT2_H	0.487	-0.161	-0.344	-15.615	-11.871	9.613
1	34	G_DC9:DG17_H	0.511	0.214	-0.08	11.928	3.999	-0.532
1	36	G_DC11:DG15_H	-0.522	0.281	0.343	-7.946	-9.928	1.376
1	37	G_DC12:DG14_H	-0.204	-0.344	-0.254	-9.835	-6.945	4.527
1	41	G_DG16:DC10_H	-0.272	-0.146	-0.248	-3.621	-3.271	2.801
1	42	G_DG17:DC9_H	0.015	-0.025	0.199	-5.694	-4.729	2.787
1	26	G_DT1:DA25_H	0.306	-0.196	0.173	5.643	-19.249	0.947
1	32	G_DT7:DA19_H	-0.333	0.062	-0.108	2.242	-12.036	-1.156
1	35	G_DT10:DA16_H	-0.273	-0.249	-0.268	6.134	-19.995	-2.678
1	39	G_DT14:DA12_H	0.117	-0.448	-0.119	-0.33	-5.61	-1.232
1	43	G_DT18:DA8_H	-0.529	-0.159	0.172	4.527	-1.522	3.618
1	45	G_DT20:DA6_H	0.248	0.361	0.353	1.273	-16.301	11.031
1	46	G_DT21:DA5_H	-0.067	-0.034	-0.036	0.363	-11.216	3.031
1	47	G_DT22:DA4_H	-0.311	-0.054	-0.118	-0.558	-14.067	4.58
1	48	G_DT23:DA3_H	0.001	0.136	-0.075	-1.328	-23.465	5.481
1	50	G_DT25:DA1_H	0.126	0.087	0.955	-5.283	-3.751	18.161

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.