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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA2174
PDB ID:
4IHT
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
E_DA2:DT24_F
0.854
-0.092
-0.686
-4.993
-3.218
-7.283
1
3
E_DA3:DT23_F
0.27
-0.1
0.638
5.551
-17.564
5.743
1
4
E_DA4:DT22_F
0.165
-0.051
0.19
8.816
-15.019
-3.524
1
5
E_DA5:DT21_F
0.106
0.158
-0.085
4.684
-9.843
1.417
1
6
E_DA6:DT20_F
-0.363
-0.278
0.486
-3.373
-12.592
-0.266
1
8
E_DA8:DT18_F
0.788
-0.18
0.379
8.294
0.464
-5.401
1
13
E_DA13:DT13_F
0.408
0.14
0.237
0.147
-19.192
-1.353
1
15
E_DA15:DT11_F
0.108
-0.255
0.49
15.169
-14.238
-9.179
1
19
E_DA19:DT7_F
-0.075
-0.246
-0.266
-3.34
-8.364
-6.283
1
24
E_DA24:DT2_F
0.784
-0.389
-0.449
-3.639
-11.491
2.01
1
9
E_DC9:DG17_F
1.128
0.074
0.206
9.886
-7.008
7.623
1
11
E_DC11:DG15_F
-0.103
-0.065
0.332
-0.23
-13.128
6.499
1
12
E_DC12:DG14_F
-0.27
-0.276
-0.112
-1.465
1.504
4.122
1
16
E_DG16:DC10_F
0.001
-0.114
0.217
2.54
-3.881
0.282
1
17
E_DG17:DC9_F
-0.06
-0.21
0.015
-7.823
-12.168
-0.179
1
1
E_DT1:DA25_F
-0.208
-0.191
0.033
-3.991
-20.138
2.097
1
7
E_DT7:DA19_F
-0.361
-0.139
0.553
-1.315
-10.077
-5.417
1
10
E_DT10:DA16_F
-0.111
-0.21
-0.199
4.92
-13.338
1.268
1
14
E_DT14:DA12_F
0.204
-0.558
0.186
-1.596
-0.781
0.89
1
18
E_DT18:DA8_F
0.189
-0.302
-0.021
0.803
-4.546
-2.482
1
20
E_DT20:DA6_F
0.023
-0.109
0.426
-5.417
-9.797
1.701
1
21
E_DT21:DA5_F
-0.104
-0.128
0.406
-15.551
-20.558
-2.313
1
22
E_DT22:DA4_F
0.04
-0.178
0.284
-10.092
-14.798
-4.572
1
23
E_DT23:DA3_F
-0.323
0.063
0.098
-4.878
-14.382
3.574
1
25
E_DT25:DA1_F
0.152
0.623
0.109
2.957
-10.643
30.687
1
27
G_DA2:DT24_H
1.144
0.164
0.555
2.611
-17.093
-8.067
1
28
G_DA3:DT23_H
0.011
0.147
0.096
9.56
-11.307
7.263
1
29
G_DA4:DT22_H
0.386
0.366
0.315
-0.309
-19.143
-1.825
1
30
G_DA5:DT21_H
0.675
-0.134
0.163
2.31
-9.796
-4.144
1
31
G_DA6:DT20_H
-0.035
-0.155
0.433
-0.995
-10.956
1.318
1
33
G_DA8:DT18_H
0.12
-0.187
0.349
8.296
5.329
-2.499
1
38
G_DA13:DT13_H
0.824
0.001
0.077
-6.378
-17.242
-4.702
1
40
G_DA15:DT11_H
0.309
-0.18
0.469
6.992
-13.52
-7.199
1
44
G_DA19:DT7_H
-0.128
-0.201
-0.091
1.267
-14.087
-2.936
1
49
G_DA24:DT2_H
0.487
-0.161
-0.344
-15.615
-11.871
9.613
1
34
G_DC9:DG17_H
0.511
0.214
-0.08
11.928
3.999
-0.532
1
36
G_DC11:DG15_H
-0.522
0.281
0.343
-7.946
-9.928
1.376
1
37
G_DC12:DG14_H
-0.204
-0.344
-0.254
-9.835
-6.945
4.527
1
41
G_DG16:DC10_H
-0.272
-0.146
-0.248
-3.621
-3.271
2.801
1
42
G_DG17:DC9_H
0.015
-0.025
0.199
-5.694
-4.729
2.787
1
26
G_DT1:DA25_H
0.306
-0.196
0.173
5.643
-19.249
0.947
1
32
G_DT7:DA19_H
-0.333
0.062
-0.108
2.242
-12.036
-1.156
1
35
G_DT10:DA16_H
-0.273
-0.249
-0.268
6.134
-19.995
-2.678
1
39
G_DT14:DA12_H
0.117
-0.448
-0.119
-0.33
-5.61
-1.232
1
43
G_DT18:DA8_H
-0.529
-0.159
0.172
4.527
-1.522
3.618
1
45
G_DT20:DA6_H
0.248
0.361
0.353
1.273
-16.301
11.031
1
46
G_DT21:DA5_H
-0.067
-0.034
-0.036
0.363
-11.216
3.031
1
47
G_DT22:DA4_H
-0.311
-0.054
-0.118
-0.558
-14.067
4.58
1
48
G_DT23:DA3_H
0.001
0.136
-0.075
-1.328
-23.465
5.481
1
50
G_DT25:DA1_H
0.126
0.087
0.955
-5.283
-3.751
18.161
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.