A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA2174  PDB ID: 4IHT 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA2:DT24_F0.854-0.092-0.686-4.993-3.218-7.283
13E_DA3:DT23_F0.27-0.10.6385.551-17.5645.743
14E_DA4:DT22_F0.165-0.0510.198.816-15.019-3.524
15E_DA5:DT21_F0.1060.158-0.0854.684-9.8431.417
16E_DA6:DT20_F-0.363-0.2780.486-3.373-12.592-0.266
18E_DA8:DT18_F0.788-0.180.3798.2940.464-5.401
113E_DA13:DT13_F0.4080.140.2370.147-19.192-1.353
115E_DA15:DT11_F0.108-0.2550.4915.169-14.238-9.179
119E_DA19:DT7_F-0.075-0.246-0.266-3.34-8.364-6.283
124E_DA24:DT2_F0.784-0.389-0.449-3.639-11.4912.01
19E_DC9:DG17_F1.1280.0740.2069.886-7.0087.623
111E_DC11:DG15_F-0.103-0.0650.332-0.23-13.1286.499
112E_DC12:DG14_F-0.27-0.276-0.112-1.4651.5044.122
116E_DG16:DC10_F0.001-0.1140.2172.54-3.8810.282
117E_DG17:DC9_F-0.06-0.210.015-7.823-12.168-0.179
11E_DT1:DA25_F-0.208-0.1910.033-3.991-20.1382.097
17E_DT7:DA19_F-0.361-0.1390.553-1.315-10.077-5.417
110E_DT10:DA16_F-0.111-0.21-0.1994.92-13.3381.268
114E_DT14:DA12_F0.204-0.5580.186-1.596-0.7810.89
118E_DT18:DA8_F0.189-0.302-0.0210.803-4.546-2.482
120E_DT20:DA6_F0.023-0.1090.426-5.417-9.7971.701
121E_DT21:DA5_F-0.104-0.1280.406-15.551-20.558-2.313
122E_DT22:DA4_F0.04-0.1780.284-10.092-14.798-4.572
123E_DT23:DA3_F-0.3230.0630.098-4.878-14.3823.574
125E_DT25:DA1_F0.1520.6230.1092.957-10.64330.687
127G_DA2:DT24_H1.1440.1640.5552.611-17.093-8.067
128G_DA3:DT23_H0.0110.1470.0969.56-11.3077.263
129G_DA4:DT22_H0.3860.3660.315-0.309-19.143-1.825
130G_DA5:DT21_H0.675-0.1340.1632.31-9.796-4.144
131G_DA6:DT20_H-0.035-0.1550.433-0.995-10.9561.318
133G_DA8:DT18_H0.12-0.1870.3498.2965.329-2.499
138G_DA13:DT13_H0.8240.0010.077-6.378-17.242-4.702
140G_DA15:DT11_H0.309-0.180.4696.992-13.52-7.199
144G_DA19:DT7_H-0.128-0.201-0.0911.267-14.087-2.936
149G_DA24:DT2_H0.487-0.161-0.344-15.615-11.8719.613
134G_DC9:DG17_H0.5110.214-0.0811.9283.999-0.532
136G_DC11:DG15_H-0.5220.2810.343-7.946-9.9281.376
137G_DC12:DG14_H-0.204-0.344-0.254-9.835-6.9454.527
141G_DG16:DC10_H-0.272-0.146-0.248-3.621-3.2712.801
142G_DG17:DC9_H0.015-0.0250.199-5.694-4.7292.787
126G_DT1:DA25_H0.306-0.1960.1735.643-19.2490.947
132G_DT7:DA19_H-0.3330.062-0.1082.242-12.036-1.156
135G_DT10:DA16_H-0.273-0.249-0.2686.134-19.995-2.678
139G_DT14:DA12_H0.117-0.448-0.119-0.33-5.61-1.232
143G_DT18:DA8_H-0.529-0.1590.1724.527-1.5223.618
145G_DT20:DA6_H0.2480.3610.3531.273-16.30111.031
146G_DT21:DA5_H-0.067-0.034-0.0360.363-11.2163.031
147G_DT22:DA4_H-0.311-0.054-0.118-0.558-14.0674.58
148G_DT23:DA3_H0.0010.136-0.075-1.328-23.4655.481
150G_DT25:DA1_H0.1260.0870.955-5.283-3.75118.161

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.