4IHT: Base Pair Morphology Step Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: NA2174 PDB ID: 4IHT

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	EE_DA2DA3:DT23DT24_FF	0.511	0.896	3.019	-10.573	1.157	38.796	1.185	-1.836	2.815	1.703	15.563	40.173
1	3	EE_DA3DA4:DT22DT23_FF	-0.452	-0.755	3.225	3.047	-0.046	33.4	-1.302	1.274	3.174	-0.079	-5.288	33.535
1	4	EE_DA4DA5:DT21DT22_FF	-0.189	-0.427	3.383	-0.003	-2.419	37.803	-0.336	0.291	3.403	-3.729	0.005	37.877
1	5	EE_DA5DA6:DT20DT21_FF	-0.164	-0.634	3.384	-6.251	-5.093	35.372	-0.266	-0.659	3.418	-8.251	10.126	36.251
1	6	EE_DA6DT7:DA19DT20_FF	-0.751	-1.407	3.259	-1.122	-3.551	31.753	-1.897	1.156	3.416	-6.462	2.042	31.965
1	8	EE_DA8DC9:DG17DT18_FF	1.352	-0.465	3.343	1.329	-0.554	33.415	-0.713	-2.124	3.399	-0.963	-2.31	33.445
1	13	EE_DA13DT14:DA12DT13_FF	0.916	0.637	3.383	-0.183	-4.462	36.632	1.624	-1.473	3.281	-7.067	0.29	36.894
1	15	EE_DA15DG16:DC10DT11_FF	0.85	-0.805	3.542	-0.128	4.666	35.446	-2.03	-1.405	3.409	7.623	0.209	35.742
1	19	EE_DA19DT20:DA6DT7_FF	0.871	-0.947	3.261	-3.999	0.887	31.024	-1.921	-2.353	3.099	1.65	7.435	31.287
1	24	EE_DA24DT25:DA1DT2_FF	1.265	0.135	3.013	-1.475	6.252	29.004	-0.941	-2.753	2.912	12.293	2.899	29.691
1	9	EE_DC9DT10:DA16DG17_FF	-0.138	-1.039	3.258	7.592	5.005	32.067	-2.621	1.466	2.958	8.84	-13.41	33.299
1	11	EE_DC11DC12:DG14DG15_FF	0.579	0.649	3.375	4.8	-3.478	39.517	1.364	-0.276	3.353	-5.109	-7.051	39.941
1	12	EE_DC12DA13:DT13DG14_FF	-1.081	1.134	3.343	-3.13	-1.516	40.085	1.826	1.207	3.371	-2.206	4.557	40.23
1	16	EE_DG16DG17:DC9DC10_FF	-0.308	-0.818	3.635	0.008	-0.265	36.461	-1.266	0.493	3.64	-0.424	-0.012	36.462
1	17	EE_DG17DT18:DA8DC9_FF	-0.627	-0.521	3.029	0.363	-2.096	35.046	-0.572	1.091	3.048	-3.476	-0.602	35.108
1	1	EE_DT1DA2:DT24DA25_FF	-0.242	1.351	3.36	6.942	0.482	43.254	1.764	1.002	3.299	0.649	-9.345	43.784
1	7	EE_DT7DA8:DT18DA19_FF	-0.181	-0.41	2.997	0.211	-1.443	39.272	-0.452	0.292	3.008	-2.146	-0.314	39.298
1	10	EE_DT10DC11:DG15DA16_FF	0.212	-0.451	3.429	-0.013	1.96	34.193	-1.088	-0.363	3.399	3.329	0.021	34.248
1	14	EE_DT14DA15:DT11DA12_FF	-1.139	0.844	2.994	-4.021	-10.749	39.881	2.228	1.224	2.782	-15.377	5.753	41.435
1	18	EE_DT18DA19:DT7DA8_FF	-0.197	-0.69	3.522	2.984	7.284	31.176	-2.618	0.917	3.249	13.29	-5.444	32.13
1	20	EE_DT20DT21:DA5DA6_FF	-0.138	-0.63	3.452	3.063	-4.889	37.735	-0.305	0.623	3.483	-7.506	-4.703	38.157
1	21	EE_DT21DT22:DA4DA5_FF	-0.103	-0.29	3.038	-0.051	-4.744	40.794	0.068	0.141	3.051	-6.777	0.073	41.057
1	22	EE_DT22DT23:DA3DA4_FF	0.363	-0.201	3.038	1.761	0.67	35.353	-0.422	-0.357	3.047	1.101	-2.897	35.402
1	23	EE_DT23DA24:DT2DA3_FF	0.207	1.294	3.399	6.51	-4.095	41.68	2.219	0.395	3.259	-5.697	-9.056	42.353
1	26	GG_DA2DA3:DT23DT24_HH	0.989	0.59	3.266	4.243	-2.082	34.481	1.308	-0.999	3.32	-3.492	-7.117	34.793
1	27	GG_DA3DA4:DT22DT23_HH	-0.586	-0.278	3.551	-2.627	-2.082	34.96	-0.121	0.542	3.594	-3.456	4.361	35.115
1	28	GG_DA4DA5:DT21DT22_HH	-0.39	-0.591	3.107	1.636	-1.524	41.738	-0.677	0.709	3.109	-2.138	-2.294	41.796
1	29	GG_DA5DA6:DT20DT21_HH	0.243	-0.956	3.235	-3.363	-4.404	34.897	-0.922	-0.899	3.291	-7.286	5.564	35.321
1	30	GG_DA6DT7:DA19DT20_HH	-0.445	-1.088	3.183	2.996	-3.033	32.099	-1.426	1.318	3.216	-5.455	-5.388	32.373
1	32	GG_DA8DC9:DG17DT18_HH	0.891	-0.717	3.274	1.599	-3.096	30.383	-0.735	-1.366	3.37	-5.883	-3.039	30.578
1	37	GG_DA13DT14:DA12DT13_HH	0.473	0.395	3.136	2.44	-4.101	31.148	1.459	-0.436	3.087	-7.581	-4.51	31.502
1	39	GG_DA15DG16:DC10DT11_HH	0.783	-0.541	3.56	2.833	2.808	34.658	-1.366	-0.838	3.558	4.693	-4.736	34.88
1	43	GG_DA19DT20:DA6DT7_HH	1.029	-0.823	3.108	-1.114	3.558	32.168	-2.06	-2.028	2.966	6.394	2.003	32.377
1	48	GG_DA24DT25:DA1DT2_HH	0.533	-0.314	3.176	-10.187	3.747	32.137	-1.108	-2.461	2.827	6.54	17.78	33.875
1	33	GG_DC9DT10:DA16DG17_HH	0.451	-0.996	3.351	7.866	-3.375	34.729	-1.109	0.462	3.447	-5.55	-12.936	35.737
1	35	GG_DC11DC12:DG14DG15_HH	0.611	0.522	3.361	6.965	-0.651	41.551	0.796	-0.101	3.407	-0.91	-9.735	42.11
1	36	GG_DC12DA13:DT13DG14_HH	-1.268	1.669	3.321	-6.694	-2.971	44.314	2.463	1.038	3.356	-3.907	8.803	44.885
1	40	GG_DG16DG17:DC9DC10_HH	-0.485	-0.587	3.232	-5.792	2.938	37.075	-1.29	0.004	3.214	4.577	9.024	37.62
1	41	GG_DG17DT18:DA8DC9_HH	-0.564	-0.763	3.066	-1.332	0.667	28.411	-1.697	0.861	3.07	1.359	2.711	28.449
1	25	GG_DT1DA2:DT24DA25_HH	-0.357	1.02	3.455	-3.185	-4.158	45.382	1.694	0.169	3.37	-5.368	4.112	45.667
1	31	GG_DT7DA8:DT18DA19_HH	-0.386	-0.356	3.125	-5.396	3.484	37.683	-0.964	-0.062	3.105	5.346	8.281	38.207
1	34	GG_DT10DC11:DG15DA16_HH	0.478	-0.738	3.594	1.549	9.056	32.707	-2.823	-0.552	3.297	15.7	-2.685	33.939
1	38	GG_DT14DA15:DT11DA12_HH	-0.622	1.031	3.166	-8.194	-5.868	43.937	1.856	0.099	3.074	-7.722	10.784	45.023
1	42	GG_DT18DA19:DT7DA8_HH	-0.045	-0.262	3.492	5.458	-0.074	36.459	-0.404	0.862	3.45	-0.118	-8.664	36.852
1	44	GG_DT20DT21:DA5DA6_HH	-0.053	-0.138	3.347	4.896	-11.143	37.81	1.139	0.667	3.229	-16.676	-7.326	39.653
1	45	GG_DT21DT22:DA4DA5_HH	0.615	-0.18	3.202	3.314	2.097	38.681	-0.521	-0.528	3.228	3.156	-4.987	38.872
1	46	GG_DT22DT23:DA3DA4_HH	0.19	0.019	3.142	0.917	0.534	37.253	-0.038	-0.18	3.146	0.836	-1.435	37.268
1	47	GG_DT23DA24:DT2DA3_HH	0.311	0.82	3.636	2.977	7.956	36.535	0.085	-0.038	3.74	12.485	-4.671	37.476

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.