4IQJ: Base Pair Morphology Parameters

A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 19-Jan-2022 number of released structures: 11891

Search for released structures

NDB ID: NA2223 PDB ID: 4IQJ

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	4	E_DA8:DT21_F	0.384	-0.148	-0.47	6.035	-22.596	6.238
1	10	E_DA14:DT15_F	-0.538	0.374	0.638	2.488	-21.829	0.867
1	16	E_DA20:DT9_F	0.482	-0.222	-0.51	-23.259	1.247	-1.558
1	1	E_DC1:DG28_F	-5.918	-1.789	-0.821	-36.929	14.739	57.858
1	2	E_DC6:DG23_F	0.812	-0.158	-0.303	15.961	-17.827	1.12
1	5	E_DC9:DG20_F	0.522	-0.123	-0.461	13.925	-15.375	5.774
1	8	E_DC12:DG17_F	0.178	0.054	0.09	-2.348	-22.748	4.002
1	9	E_DC13:DG16_F	0.054	0.162	0.288	-0.355	-14.165	2.329
1	14	E_DC18:DG11_F	1.265	-0.159	-0.347	-11.613	-7.147	4.68
1	15	E_DC19:DG10_F	0.562	-0.349	-0.447	-9.622	-2.798	2.327
1	3	E_DG7:DC22_F	-0.154	-0.141	-1.266	-14.568	-7.615	3.714
1	6	E_DG10:DC19_F	-0.81	-0.09	-0.381	-6.06	-13.814	6.997
1	7	E_DG11:DC18_F	-0.726	0.389	-0.116	1.577	-11.61	12.185
1	11	E_DG15:DC14_F	-0.686	0.054	-0.188	-4.85	-25.091	5.963
1	13	E_DG17:DC12_F	0.288	0.179	0.339	-22.966	-23.83	4.102
1	12	E_DT16:DA13_F	0.009	-0.18	-0.296	1.777	-35.48	6.231
1	19	G_DA3:DT26_H	-0.394	0.015	0.436	-5.624	-17.692	3.312
1	20	G_DA4:DT25_H	-0.535	0.045	0.82	-1.039	-18.375	3.357
1	21	G_DA5:DT24_H	-0.078	0.538	0.56	-8.542	-23.952	5.535
1	24	G_DA8:DT21_H	0.084	-0.109	0.644	3.032	-13.35	2.446
1	30	G_DA14:DT15_H	0.291	0.225	0.129	-0.136	-14.399	4.254
1	35	G_DA20:DT9_H	-0.673	0.193	0.176	-27.859	-10.662	11.125
1	17	G_DC1:DG28_H	0.729	-0.136	0.216	-7.607	-11.445	8.81
1	22	G_DC6:DG23_H	0.436	0.147	0.058	2.585	-19.85	2.961
1	25	G_DC9:DG20_H	0.497	-0.145	0.809	0.432	-10.003	4.463
1	28	G_DC12:DG17_H	0.219	0.09	0.245	0.018	-12.926	4.618
1	29	G_DC13:DG16_H	0.115	0.079	-0.309	-0.931	-19.903	6.543
1	34	G_DC18:DG11_H	1.205	0.075	-1.397	44.301	-10.111	9.533
1	18	G_DG2:DC27_H	-0.616	-0.203	0.285	-10.364	-15.288	0.167
1	23	G_DG7:DC22_H	0.022	0.11	0.183	1.157	-16.234	5.019
1	26	G_DG10:DC19_H	-0.409	-0.046	2.001	4.192	-9.443	10.581
1	27	G_DG11:DC18_H	-0.987	-0.412	1.495	12.121	-4.427	5.936
1	31	G_DG15:DC14_H	-0.046	0.208	-0.223	-3.544	-22.482	3.747
1	33	G_DG17:DC12_H	-0.459	-0.203	0.458	-2.008	-1.739	4.664
1	32	G_DT16:DA13_H	0.197	-0.091	-0.356	-0.493	-19.66	2.26
1	38	I_DA3:DT26_J	-0.02	0.176	0.059	5.247	-20.107	3.952
1	39	I_DA4:DT25_J	0.373	-0.044	0.13	7.713	-24.324	1.71
1	40	I_DA5:DT24_J	0.202	-0.067	0.067	13.131	-22.6	0.849
1	43	I_DA8:DT21_J	-0.099	-0.092	0.451	3.203	-21.24	-0.771
1	47	I_DA14:DT15_J	-4.081	-0.925	-1.205	-4.056	-15.034	17.044
1	53	I_DA20:DT9_J	-0.937	0.166	-0.345	-13.35	-18.726	13.622
1	36	I_DC1:DG28_J	0.302	-0.117	0.964	-23.911	11.088	6.051
1	41	I_DC6:DG23_J	0.331	-0.054	0.312	-4.753	-11.622	0.681
1	45	I_DC12:DG17_J	0.386	0.23	0.198	-2.607	-17.898	0.494
1	46	I_DC13:DG16_J	0.096	0.138	0.007	4.198	-18.239	3.498
1	51	I_DC18:DG11_J	0.792	0.278	0.633	8.487	-20.271	12.666
1	52	I_DC19:DG10_J	-0.114	-0.101	-1.217	4.454	-31.147	14.148
1	37	I_DG2:DC27_J	-0.519	0.114	-0.014	1.764	-11.771	3.479
1	42	I_DG7:DC22_J	-0.488	-0.063	0.099	-3.511	-14.076	3.116
1	44	I_DG11:DC18_J	-0.51	-0.075	-0.431	-5.125	-31.627	6.511
1	48	I_DG15:DC14_J	-0.478	0.184	-0.645	-4.222	-18.823	15.487
1	50	I_DG17:DC12_J	-0.791	0.14	0.027	-8.434	-13.234	10.715
1	49	I_DT16:DA13_J	0.449	-0.265	-0.99	14.445	-21.981	5.338
1	56	K_DA3:DT26_L	-0.027	0.182	-0.055	4.849	-20.873	4.719
1	57	K_DA4:DT25_L	0.427	-0.222	-0.796	-7.089	-31.685	3.739
1	58	K_DA5:DT24_L	0.195	-0.079	-0.225	1.374	-25.807	0.138
1	61	K_DA8:DT21_L	-0.181	-0.086	0.66	7.424	-20.792	-0.215
1	67	K_DA14:DT15_L	0.025	-0.251	0.745	5.804	-14.484	0.327
1	73	K_DA20:DT9_L	-0.469	0.126	-0.512	0.881	-23.536	12.25
1	54	K_DC1:DG28_L	0.683	-0.181	-0.145	1.476	-19.312	8.025
1	59	K_DC6:DG23_L	0.13	-0.075	0.585	-9.129	-8.619	-0.175
1	62	K_DC9:DG20_L	0.262	-0.043	0.493	-2.3	-6.604	2.252
1	65	K_DC12:DG17_L	0.362	0.165	-0.003	7.712	-18.494	3.311
1	66	K_DC13:DG16_L	0.127	0.053	-0.436	9.014	-27.957	1.368
1	71	K_DC18:DG11_L	1.272	-0.312	0.003	3.495	-14.723	8.161
1	72	K_DC19:DG10_L	0.896	0.088	-0.739	22.67	-24.213	5.604
1	55	K_DG2:DC27_L	-0.5	0.16	0.103	-0.058	-14.578	5.84
1	60	K_DG7:DC22_L	-0.676	0.022	0.543	2.225	-14.029	4.399
1	63	K_DG10:DC19_L	-0.765	-0.061	0.295	4.319	-19.764	4.997
1	64	K_DG11:DC18_L	-0.57	0.05	0.108	10.472	-17.543	-1.994
1	68	K_DG15:DC14_L	-0.172	-0.097	-0.226	0.246	-16.567	4.663
1	70	K_DG17:DC12_L	-0.82	-0.277	0.255	-0.517	-12.795	5.588
1	69	K_DT16:DA13_L	0.161	-0.297	-0.218	0.342	-18.933	5.199

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.