A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID: NA2223  PDB ID: 4IQJ 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12E_DA5:DT24_F-0.0370.756-0.339-5.683-8.7064.17
15E_DA8:DT21_F0.384-0.148-0.476.035-22.5966.238
111E_DA14:DT15_F-0.5380.3740.6382.488-21.8290.867
117E_DA20:DT9_F0.482-0.222-0.51-23.2591.247-1.558
11E_DC1:DG28_F-5.918-1.789-0.821-36.92914.73957.858
13E_DC6:DG23_F0.812-0.158-0.30315.961-17.8271.12
16E_DC9:DG20_F0.522-0.123-0.46113.925-15.3755.774
19E_DC12:DG17_F0.1780.0540.09-2.348-22.7484.002
110E_DC13:DG16_F0.0540.1620.288-0.355-14.1652.329
115E_DC18:DG11_F1.265-0.159-0.347-11.613-7.1474.68
116E_DC19:DG10_F0.562-0.349-0.447-9.622-2.7982.327
14E_DG7:DC22_F-0.154-0.141-1.266-14.568-7.6153.714
17E_DG10:DC19_F-0.81-0.09-0.381-6.06-13.8146.997
18E_DG11:DC18_F-0.7260.389-0.1161.577-11.61112.185
112E_DG15:DC14_F-0.6860.054-0.188-4.85-25.0915.963
114E_DG17:DC12_F0.2880.1790.339-22.966-23.834.102
113E_DT16:DA13_F0.009-0.18-0.2961.777-35.486.231
120G_DA3:DT26_H-0.3940.0150.436-5.624-17.6923.312
121G_DA4:DT25_H-0.5350.0450.82-1.039-18.3743.357
122G_DA5:DT24_H-0.0780.5380.56-8.542-23.9525.535
125G_DA8:DT21_H0.084-0.1090.6443.032-13.352.446
131G_DA14:DT15_H0.2910.2250.129-0.136-14.3994.254
136G_DA20:DT9_H-0.6730.1930.176-27.859-10.66211.125
118G_DC1:DG28_H0.729-0.1360.216-7.607-11.4458.81
123G_DC6:DG23_H0.4360.1470.0582.585-19.852.961
126G_DC9:DG20_H0.497-0.1450.8090.432-10.0034.463
129G_DC12:DG17_H0.2190.090.2450.018-12.9264.618
130G_DC13:DG16_H0.1150.079-0.309-0.931-19.9036.543
135G_DC18:DG11_H1.2050.075-1.39744.301-10.1119.533
119G_DG2:DC27_H-0.616-0.2030.285-10.364-15.2880.167
124G_DG7:DC22_H0.0220.110.1831.157-16.2345.019
127G_DG10:DC19_H-0.409-0.0462.0014.192-9.44310.581
128G_DG11:DC18_H-0.987-0.4121.49512.121-4.4275.936
132G_DG15:DC14_H-0.0460.208-0.223-3.544-22.4823.747
134G_DG17:DC12_H-0.459-0.2030.458-2.008-1.7394.664
133G_DT16:DA13_H0.197-0.091-0.356-0.493-19.662.26
139I_DA3:DT26_J-0.020.1760.0595.247-20.1073.952
140I_DA4:DT25_J0.373-0.0440.137.713-24.3241.71
141I_DA5:DT24_J0.202-0.0670.06713.131-22.60.849
144I_DA8:DT21_J-0.099-0.0920.4513.203-21.24-0.771
149I_DA14:DT15_J-4.081-0.925-1.205-4.056-15.03417.044
155I_DA20:DT9_J-0.9370.166-0.345-13.35-18.72613.622
137I_DC1:DG28_J0.302-0.1170.964-23.91111.0886.051
142I_DC6:DG23_J0.331-0.0540.312-4.753-11.6220.681
147I_DC12:DG17_J0.3860.230.198-2.607-17.8980.494
148I_DC13:DG16_J0.0960.1380.0074.198-18.2393.498
153I_DC18:DG11_J0.7920.2780.6338.487-20.27112.666
154I_DC19:DG10_J-0.114-0.101-1.2174.454-31.14714.148
138I_DG2:DC27_J-0.5190.114-0.0141.764-11.7713.479
143I_DG7:DC22_J-0.488-0.0630.099-3.511-14.0763.116
145I_DG10:DC19_J0.7721.1240.15322.665-14.68710.123
146I_DG11:DC18_J-0.51-0.075-0.431-5.125-31.6276.511
150I_DG15:DC14_J-0.4780.184-0.645-4.222-18.82315.487
152I_DG17:DC12_J-0.7910.140.027-8.434-13.23410.715
156I_DOC21:DG8_J-0.423-0.183-0.688-14.211-21.41715.939
151I_DT16:DA13_J0.449-0.265-0.9914.445-21.9815.338
159K_DA3:DT26_L-0.0270.182-0.0554.849-20.8734.719
160K_DA4:DT25_L0.427-0.222-0.796-7.089-31.6853.739
161K_DA5:DT24_L0.195-0.079-0.2251.374-25.8070.138
164K_DA8:DT21_L-0.181-0.0860.667.424-20.792-0.215
170K_DA14:DT15_L0.025-0.2510.7455.804-14.4840.327
176K_DA20:DT9_L-0.4690.126-0.5120.881-23.53612.25
157K_DC1:DG28_L0.683-0.181-0.1451.476-19.3128.025
162K_DC6:DG23_L0.13-0.0750.585-9.129-8.619-0.175
165K_DC9:DG20_L0.262-0.0430.493-2.3-6.6042.252
168K_DC12:DG17_L0.3620.165-0.0037.712-18.4943.311
169K_DC13:DG16_L0.1270.053-0.4369.014-27.9571.368
174K_DC18:DG11_L1.272-0.3120.0033.495-14.7238.161
175K_DC19:DG10_L0.8960.088-0.73922.67-24.2135.604
158K_DG2:DC27_L-0.50.160.103-0.058-14.5785.84
163K_DG7:DC22_L-0.6760.0220.5432.225-14.0294.399
166K_DG10:DC19_L-0.765-0.0610.2954.319-19.7644.997
167K_DG11:DC18_L-0.570.050.10810.472-17.543-1.994
171K_DG15:DC14_L-0.172-0.097-0.2260.246-16.5674.663
173K_DG17:DC12_L-0.82-0.2770.255-0.517-12.7955.588
172K_DT16:DA13_L0.161-0.297-0.2180.342-18.9335.199

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.