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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 29-Jun-2022 number of released structures: 12153
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NDB ID:
NA2223
PDB ID:
4IQJ
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
E_DA5:DT24_F
-0.037
0.756
-0.339
-5.683
-8.706
4.17
1
5
E_DA8:DT21_F
0.384
-0.148
-0.47
6.035
-22.596
6.238
1
11
E_DA14:DT15_F
-0.538
0.374
0.638
2.488
-21.829
0.867
1
17
E_DA20:DT9_F
0.482
-0.222
-0.51
-23.259
1.247
-1.558
1
1
E_DC1:DG28_F
-5.918
-1.789
-0.821
-36.929
14.739
57.858
1
3
E_DC6:DG23_F
0.812
-0.158
-0.303
15.961
-17.827
1.12
1
6
E_DC9:DG20_F
0.522
-0.123
-0.461
13.925
-15.375
5.774
1
9
E_DC12:DG17_F
0.178
0.054
0.09
-2.348
-22.748
4.002
1
10
E_DC13:DG16_F
0.054
0.162
0.288
-0.355
-14.165
2.329
1
15
E_DC18:DG11_F
1.265
-0.159
-0.347
-11.613
-7.147
4.68
1
16
E_DC19:DG10_F
0.562
-0.349
-0.447
-9.622
-2.798
2.327
1
4
E_DG7:DC22_F
-0.154
-0.141
-1.266
-14.568
-7.615
3.714
1
7
E_DG10:DC19_F
-0.81
-0.09
-0.381
-6.06
-13.814
6.997
1
8
E_DG11:DC18_F
-0.726
0.389
-0.116
1.577
-11.611
12.185
1
12
E_DG15:DC14_F
-0.686
0.054
-0.188
-4.85
-25.091
5.963
1
14
E_DG17:DC12_F
0.288
0.179
0.339
-22.966
-23.83
4.102
1
13
E_DT16:DA13_F
0.009
-0.18
-0.296
1.777
-35.48
6.231
1
20
G_DA3:DT26_H
-0.394
0.015
0.436
-5.624
-17.692
3.312
1
21
G_DA4:DT25_H
-0.535
0.045
0.82
-1.039
-18.374
3.357
1
22
G_DA5:DT24_H
-0.078
0.538
0.56
-8.542
-23.952
5.535
1
25
G_DA8:DT21_H
0.084
-0.109
0.644
3.032
-13.35
2.446
1
31
G_DA14:DT15_H
0.291
0.225
0.129
-0.136
-14.399
4.254
1
36
G_DA20:DT9_H
-0.673
0.193
0.176
-27.859
-10.662
11.125
1
18
G_DC1:DG28_H
0.729
-0.136
0.216
-7.607
-11.445
8.81
1
23
G_DC6:DG23_H
0.436
0.147
0.058
2.585
-19.85
2.961
1
26
G_DC9:DG20_H
0.497
-0.145
0.809
0.432
-10.003
4.463
1
29
G_DC12:DG17_H
0.219
0.09
0.245
0.018
-12.926
4.618
1
30
G_DC13:DG16_H
0.115
0.079
-0.309
-0.931
-19.903
6.543
1
35
G_DC18:DG11_H
1.205
0.075
-1.397
44.301
-10.111
9.533
1
19
G_DG2:DC27_H
-0.616
-0.203
0.285
-10.364
-15.288
0.167
1
24
G_DG7:DC22_H
0.022
0.11
0.183
1.157
-16.234
5.019
1
27
G_DG10:DC19_H
-0.409
-0.046
2.001
4.192
-9.443
10.581
1
28
G_DG11:DC18_H
-0.987
-0.412
1.495
12.121
-4.427
5.936
1
32
G_DG15:DC14_H
-0.046
0.208
-0.223
-3.544
-22.482
3.747
1
34
G_DG17:DC12_H
-0.459
-0.203
0.458
-2.008
-1.739
4.664
1
33
G_DT16:DA13_H
0.197
-0.091
-0.356
-0.493
-19.66
2.26
1
39
I_DA3:DT26_J
-0.02
0.176
0.059
5.247
-20.107
3.952
1
40
I_DA4:DT25_J
0.373
-0.044
0.13
7.713
-24.324
1.71
1
41
I_DA5:DT24_J
0.202
-0.067
0.067
13.131
-22.6
0.849
1
44
I_DA8:DT21_J
-0.099
-0.092
0.451
3.203
-21.24
-0.771
1
49
I_DA14:DT15_J
-4.081
-0.925
-1.205
-4.056
-15.034
17.044
1
55
I_DA20:DT9_J
-0.937
0.166
-0.345
-13.35
-18.726
13.622
1
37
I_DC1:DG28_J
0.302
-0.117
0.964
-23.911
11.088
6.051
1
42
I_DC6:DG23_J
0.331
-0.054
0.312
-4.753
-11.622
0.681
1
47
I_DC12:DG17_J
0.386
0.23
0.198
-2.607
-17.898
0.494
1
48
I_DC13:DG16_J
0.096
0.138
0.007
4.198
-18.239
3.498
1
53
I_DC18:DG11_J
0.792
0.278
0.633
8.487
-20.271
12.666
1
54
I_DC19:DG10_J
-0.114
-0.101
-1.217
4.454
-31.147
14.148
1
38
I_DG2:DC27_J
-0.519
0.114
-0.014
1.764
-11.771
3.479
1
43
I_DG7:DC22_J
-0.488
-0.063
0.099
-3.511
-14.076
3.116
1
45
I_DG10:DC19_J
0.772
1.124
0.153
22.665
-14.687
10.123
1
46
I_DG11:DC18_J
-0.51
-0.075
-0.431
-5.125
-31.627
6.511
1
50
I_DG15:DC14_J
-0.478
0.184
-0.645
-4.222
-18.823
15.487
1
52
I_DG17:DC12_J
-0.791
0.14
0.027
-8.434
-13.234
10.715
1
56
I_DOC21:DG8_J
-0.423
-0.183
-0.688
-14.211
-21.417
15.939
1
51
I_DT16:DA13_J
0.449
-0.265
-0.99
14.445
-21.981
5.338
1
59
K_DA3:DT26_L
-0.027
0.182
-0.055
4.849
-20.873
4.719
1
60
K_DA4:DT25_L
0.427
-0.222
-0.796
-7.089
-31.685
3.739
1
61
K_DA5:DT24_L
0.195
-0.079
-0.225
1.374
-25.807
0.138
1
64
K_DA8:DT21_L
-0.181
-0.086
0.66
7.424
-20.792
-0.215
1
70
K_DA14:DT15_L
0.025
-0.251
0.745
5.804
-14.484
0.327
1
76
K_DA20:DT9_L
-0.469
0.126
-0.512
0.881
-23.536
12.25
1
57
K_DC1:DG28_L
0.683
-0.181
-0.145
1.476
-19.312
8.025
1
62
K_DC6:DG23_L
0.13
-0.075
0.585
-9.129
-8.619
-0.175
1
65
K_DC9:DG20_L
0.262
-0.043
0.493
-2.3
-6.604
2.252
1
68
K_DC12:DG17_L
0.362
0.165
-0.003
7.712
-18.494
3.311
1
69
K_DC13:DG16_L
0.127
0.053
-0.436
9.014
-27.957
1.368
1
74
K_DC18:DG11_L
1.272
-0.312
0.003
3.495
-14.723
8.161
1
75
K_DC19:DG10_L
0.896
0.088
-0.739
22.67
-24.213
5.604
1
58
K_DG2:DC27_L
-0.5
0.16
0.103
-0.058
-14.578
5.84
1
63
K_DG7:DC22_L
-0.676
0.022
0.543
2.225
-14.029
4.399
1
66
K_DG10:DC19_L
-0.765
-0.061
0.295
4.319
-19.764
4.997
1
67
K_DG11:DC18_L
-0.57
0.05
0.108
10.472
-17.543
-1.994
1
71
K_DG15:DC14_L
-0.172
-0.097
-0.226
0.246
-16.567
4.663
1
73
K_DG17:DC12_L
-0.82
-0.277
0.255
-0.517
-12.795
5.588
1
72
K_DT16:DA13_L
0.161
-0.297
-0.218
0.342
-18.933
5.199
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.