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As of 23-Sep-2020 number of released structures: 10967
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NDB ID: NA2208  PDB ID: 4IR1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
18G_DA848:DT866_H-0.2180.194-0.12614.945-5.898-4.683
111G_DA851:DT863_H-0.1250.0640.014-7.926-14.8292.316
15G_DC845:DG869_H0.2020.045-0.1040.916-4.083-1.547
16G_DC846:DG868_H-0.5990.07-0.05-3.758-3.531-0.286
112G_DC852:DG862_H0.297-0.043-0.318-1.266-17.1253.23
113G_DC853:DG861_H-0.235-0.2030.312-5.675-12.457-2.732
114G_DC854:DG860_H0.053-0.058-0.023-0.53310.4450.937
11G_DG841:DC873_H-0.1470.19-0.05314.633-10.704-1.84
12G_DG842:DC872_H-0.511-0.061-0.587-7.057-12.8850.737
13G_DG843:DC871_H0.0380.124-0.377-16.628-7.3230.186
19G_DG849:DC865_H-0.380.0060.22515.894-2.6691.892
110G_DG850:DC864_H-0.072-0.076-0.656-1.24-13.4391.659
14G_DT844:DA870_H-0.3720.096-0.085-5.8-5.202-0.883
17G_DT847:DA867_H-0.3670.05-0.1771.838-4.3171.608
122B_DA848:DT866_C0.463-0.399-0.0236.479-10.060.409
125B_DA851:DT863_C-0.193-0.2960.0953.602-7.8016.907
119B_DC845:DG869_C0.2660.003-0.2193.04-6.273-3.494
120B_DC846:DG868_C0.1620.085-0.037-3.1091.057-4.797
126B_DC852:DG862_C0.057-0.1740.1532.014-11.863-3.0
127B_DC853:DG861_C-0.05-0.0630.144-0.515-8.475-3.288
128B_DC854:DG860_C-0.355-0.148-0.2224.164-11.817-1.091
115B_DG841:DC873_C0.1520.0560.69216.301-7.673-1.278
116B_DG842:DC872_C0.15-0.1360.12-2.854-15.8570.434
117B_DG843:DC871_C0.2470.08-0.33-16.785-14.3640.79
123B_DG849:DC865_C0.194-0.1870.15313.353-4.4421.603
124B_DG850:DC864_C0.1810.05-0.273-2.211-15.4232.673
118B_DT844:DA870_C-0.01-0.053-0.088-9.033-2.9570.434
121B_DT847:DA867_C0.370.049-0.1120.124-0.899-0.096

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.