A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 11-Dec-2019 number of released structures: 10507
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NDB ID: NA2224  PDB ID: 4IRI 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DA2:DT23_C0.104-0.022-0.2138.962-15.5382.088
17B_DA7:DT18_C0.327-0.1140.0876.9-16.979-0.356
18B_DA8:DT17_C0.25-0.1740.0548.753-14.3251.158
13B_DC3:DG22_C0.1480.116-0.1288.013-16.7043.054
14B_DC4:DG21_C0.615-0.1630.066-11.624-5.331-1.629
11B_DG1:DC24_C-0.406-0.3870.182-2.905-13.759-3.664
15B_DG5:DC20_C0.034-0.116-0.41-1.479-6.677-0.126
16B_DG6:DC19_C-0.166-0.144-0.0611.696-8.582-5.417
19B_DG9:DC16_C-0.397-0.1860.2641.439-17.971-1.007
111B_DG11:DC14_C-0.506-0.479-0.3030.248-12.9382.143
112B_DG12:DC13_C0.176-0.347-0.0425.836-14.239-1.443
110B_DT10:DA15_C0.039-0.2680.111-5.769-13.221-2.636

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.