A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA2366  PDB ID: 4J8W 


Base Pair Hydrogen Bonding Classification

CSV Format

Model NumberPair NumberPair NameLeontis / Westhof ClassificationSaenger Classification
11I_DA-72:DT72_J120
14I_DA-69:DT69_J120
15I_DA-68:DT68_J120
17I_DA-66:DT66_J120
111I_DA-62:DT62_J120
117I_DA-56:DT56_J120
119I_DA-54:DT54_J120
121I_DA-52:DT52_J120
124I_DA-49:DT49_J120
127I_DA-46:DT46_J120
128I_DA-45:DT45_J120
129I_DA-44:DT44_J120
130I_DA-43:DT43_J120
135I_DA-38:DT38_J120
141I_DA-32:DT32_J120
142I_DA-31:DT31_J120
143I_DA-30:DT30_J120
151I_DA-22:DT22_J120
154I_DA-19:DT19_J120
155I_DA-18:DT18_J120
156I_DA-17:DT17_J120
157I_DA-16:DT16_J120
161I_DA-12:DT12_J120
167I_DA-6:DT6_J120
172I_DA-1:DT1_J120
173I_DA0:DT0_J120
176I_DA3:DT-3_J120
181I_DA8:DT-8_J120
182I_DA9:DT-9_J120
184I_DA11:DT-11_J120
194I_DA21:DT-21_J120
198I_DA25:DT-25_J120
1101I_DA28:DT-28_J10
1108I_DA35:DT-35_J120
1109I_DA36:DT-36_J120
1110I_DA37:DT-37_J120
1112I_DA39:DT-39_J120
1114I_DA41:DT-41_J120
1122I_DA50:DT-50_J10
1125I_DA53:DT-53_J120
1131I_DA59:DT-59_J120
1137I_DA65:DT-65_J120
1139I_DA67:DT-67_J120
1143I_DA71:DT-71_J120
13I_DC-70:DG70_J119
19I_DC-64:DG64_J119
110I_DC-63:DG63_J119
112I_DC-61:DG61_J119
113I_DC-60:DG60_J119
116I_DC-57:DG57_J119
122I_DC-51:DG51_J119
125I_DC-48:DG48_J119
126I_DC-47:DG47_J119
144I_DC-29:DG29_J119
147I_DC-26:DG26_J119
149I_DC-24:DG24_J119
150I_DC-23:DG23_J119
153I_DC-20:DG20_J119
160I_DC-13:DG13_J10
166I_DC-7:DG7_J119
169I_DC-4:DG4_J119
175I_DC2:DG-2_J119
178I_DC5:DG-5_J119
183I_DC10:DG-10_J119
187I_DC14:DG-14_J119
188I_DC15:DG-15_J119
1100I_DC27:DG-27_J119
1106I_DC33:DG-33_J10
1107I_DC34:DG-34_J119
1113I_DC40:DG-40_J119
1115I_DC42:DG-42_J119
1127I_DC55:DG-55_J119
1130I_DC58:DG-58_J119
115I_DG-58:DC58_J119
118I_DG-55:DC55_J10
131I_DG-42:DC42_J00
133I_DG-40:DC40_J119
139I_DG-34:DC34_J119
140I_DG-33:DC33_J119
146I_DG-27:DC27_J119
158I_DG-15:DC15_J119
159I_DG-14:DC14_J119
163I_DG-10:DC10_J119
168I_DG-5:DC5_J119
171I_DG-2:DC2_J119
177I_DG4:DC-4_J119
180I_DG7:DC-7_J119
186I_DG13:DC-13_J119
193I_DG20:DC-20_J119
196I_DG23:DC-23_J10
197I_DG24:DC-24_J119
199I_DG26:DC-26_J119
1102I_DG29:DC-29_J119
1120I_DG47:DC-47_J10
1121I_DG48:DC-48_J10
1123I_DG51:DC-51_J10
1129I_DG57:DC-57_J119
1132I_DG60:DC-60_J119
1133I_DG61:DC-61_J119
1135I_DG63:DC-63_J119
1136I_DG64:DC-64_J119
1142I_DG70:DC-70_J119
12I_DT-71:DA71_J120
16I_DT-67:DA67_J120
18I_DT-65:DA65_J120
114I_DT-59:DA59_J120
120I_DT-53:DA53_J120
123I_DT-50:DA50_J00
132I_DT-41:DA41_J120
134I_DT-39:DA39_J120
136I_DT-37:DA37_J120
137I_DT-36:DA36_J120
138I_DT-35:DA35_J120
145I_DT-28:DA28_J120
148I_DT-25:DA25_J120
152I_DT-21:DA21_J120
162I_DT-11:DA11_J120
164I_DT-9:DA9_J120
165I_DT-8:DA8_J120
170I_DT-3:DA3_J120
174I_DT1:DA-1_J120
179I_DT6:DA-6_J120
185I_DT12:DA-12_J120
189I_DT16:DA-16_J120
190I_DT17:DA-17_J120
191I_DT18:DA-18_J120
192I_DT19:DA-19_J120
195I_DT22:DA-22_J120
1103I_DT30:DA-30_J120
1104I_DT31:DA-31_J120
1105I_DT32:DA-32_J120
1111I_DT38:DA-38_J120
1116I_DT43:DA-43_J120
1117I_DT44:DA-44_J120
1118I_DT45:DA-45_J120
1119I_DT46:DA-46_J120
1124I_DT52:DA-52_J00
1126I_DT54:DA-54_J120
1128I_DT56:DA-56_J120
1134I_DT62:DA-62_J120
1138I_DT66:DA-66_J120
1140I_DT68:DA-68_J120
1141I_DT69:DA-69_J120
1144I_DT72:DA-72_J120

Leontis/Westhof Classification Legend

Base-Phosphate Interactions Legend

Base-Stacking Interactions Legend

Saenger Classification Legend

Correspondence of Leontis/Westhof names to Saenger numbering (table)