A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
Search for released structures

NDB ID: NA2366  PDB ID: 4J8W 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
11I_DA-72:DT72_J-0.76-0.3050.491-6.8942.133-3.378
14I_DA-69:DT69_J0.399-0.109-0.3860.936-19.0266.184
15I_DA-68:DT68_J0.96-0.0410.2527.296-17.5683.619
17I_DA-66:DT66_J0.5390.0690.2936.127-18.017-3.913
111I_DA-62:DT62_J-0.235-0.3690.90512.624-11.524-6.447
117I_DA-56:DT56_J0.758-0.0740.47810.283-20.0660.997
119I_DA-54:DT54_J0.7810.655-0.768-10.477-15.935-3.96
121I_DA-52:DT52_J0.164-0.044-0.101-12.292-12.004-3.977
124I_DA-49:DT49_J0.2730.4830.275-3.214-13.3833.885
127I_DA-46:DT46_J0.3860.040.8326.954-21.951-3.413
128I_DA-45:DT45_J0.5140.0080.33520.101-28.274-2.809
129I_DA-44:DT44_J0.767-0.0370.1936.96-32.59-1.349
130I_DA-43:DT43_J0.5670.1110.2811.184-18.233.818
135I_DA-38:DT38_J-0.8960.154-0.015-17.67-13.05-7.194
141I_DA-32:DT32_J-0.599-0.0340.1784.289-21.01412.81
142I_DA-31:DT31_J-0.60.2470.041-0.228-16.2466.299
143I_DA-30:DT30_J-0.780.1650.245-3.673-5.045.959
151I_DA-22:DT22_J0.1160.0490.81712.055-0.768-5.549
154I_DA-19:DT19_J-0.665-0.466-0.6297.041-23.6923.134
155I_DA-18:DT18_J0.4050.124-0.243-1.098-27.3858.753
156I_DA-17:DT17_J0.3270.0110.235-9.732-21.040.2
157I_DA-16:DT16_J0.179-0.3320.62-4.122-12.427-4.124
161I_DA-12:DT12_J-0.645-0.3550.285-8.446-7.753-0.812
167I_DA-6:DT6_J0.618-0.1070.5280.553-17.685-3.036
172I_DA-1:DT1_J0.154-0.029-0.124-2.084-13.5030.265
173I_DA0:DT0_J0.557-0.3620.1791.283-11.5450.936
176I_DA3:DT-3_J-0.4170.1640.2821.495-22.7-2.796
181I_DA8:DT-8_J0.147-0.160.0620.6-12.4754.882
182I_DA9:DT-9_J-0.014-0.284-0.194.121-15.2090.377
184I_DA11:DT-11_J-0.261-0.262-0.0211.338-12.8616.491
194I_DA21:DT-21_J-0.761-0.165-0.263-23.293-4.793-6.2
198I_DA25:DT-25_J0.6440.1030.5957.527-32.6262.812
1101I_DA28:DT-28_J-0.9190.514-0.275-18.379-17.13111.963
1108I_DA35:DT-35_J-0.143-0.167-0.595-17.655-17.069-1.799
1109I_DA36:DT-36_J-0.229-0.196-0.366-5.775-28.460.804
1110I_DA37:DT-37_J-0.067-0.215-0.0381.639-6.0426.693
1112I_DA39:DT-39_J-0.4-0.369-0.601-14.492-27.4120.055
1114I_DA41:DT-41_J1.039-0.142-0.337-10.114-20.829-2.972
1122I_DA50:DT-50_J-0.4730.3520.60111.033-35.56410.625
1125I_DA53:DT-53_J-0.0510.295-0.083-1.32-5.576-2.605
1131I_DA59:DT-59_J-0.2530.0360.7699.126-11.6895.13
1137I_DA65:DT-65_J-0.775-0.0210.1680.824-12.777-1.256
1139I_DA67:DT-67_J-0.494-0.2840.123-12.903-8.365-0.98
1143I_DA71:DT-71_J1.207-0.267-0.318-1.9433.1850.989
13I_DC-70:DG70_J-0.5210.239-0.2062.797-11.1514.295
19I_DC-64:DG64_J-0.346-0.031-0.067.542-13.9074.665
110I_DC-63:DG63_J-1.0880.225-0.4728.365-9.8581.512
112I_DC-61:DG61_J0.0180.2260.1068.101-14.5613.967
113I_DC-60:DG60_J0.2850.0310.489-9.634-6.3086.62
116I_DC-57:DG57_J1.1480.1510.02813.402-10.7099.662
122I_DC-51:DG51_J0.35-0.1030.1458.503-11.497-1.379
125I_DC-48:DG48_J0.5890.2650.5992.428-8.619-0.387
126I_DC-47:DG47_J0.6990.389-0.30424.398-17.0378.682
144I_DC-29:DG29_J-0.3390.4780.233-2.13-9.0562.135
147I_DC-26:DG26_J1.087-0.197-0.71113.194-18.7398.971
149I_DC-24:DG24_J-0.013-0.0020.186-4.171-7.9955.296
150I_DC-23:DG23_J0.8610.264-0.0124.294-10.567-1.026
153I_DC-20:DG20_J-0.087-0.1010.09416.009-14.6284.983
160I_DC-13:DG13_J0.1470.6360.747-11.943-17.40711.707
166I_DC-7:DG7_J0.9960.162-0.44217.507-13.7748.494
169I_DC-4:DG4_J-0.456-0.1430.586-7.262-16.674-1.591
175I_DC2:DG-2_J0.453-0.1760.183-0.117-6.0440.164
178I_DC5:DG-5_J0.596-0.405-0.45110.955-10.001-3.804
183I_DC10:DG-10_J0.094-0.061-0.4399.854-1.2230.712
187I_DC14:DG-14_J0.802-0.2260.0710.4335.2470.251
188I_DC15:DG-15_J-0.1070.055-0.234.0251.1631.413
1100I_DC27:DG-27_J0.6390.2580.27510.269-26.5011.347
1106I_DC33:DG-33_J0.7390.4730.129-17.009-1.0729.122
1107I_DC34:DG-34_J-0.153-0.2881.232-17.9712.807-1.299
1113I_DC40:DG-40_J-0.683-0.148-0.4489.595-25.710.497
1115I_DC42:DG-42_J0.02-0.064-0.2672.821-15.3282.958
1127I_DC55:DG-55_J-0.123-0.0980.398-11.846-15.5784.487
1130I_DC58:DG-58_J0.247-0.0260.2810.218-3.4352.612
115I_DG-58:DC58_J-0.7030.1980.101-5.511-6.023.866
118I_DG-55:DC55_J0.0830.4790.4569.538-19.7339.233
131I_DG-42:DC42_J-0.1160.9160.375-10.562-17.3685.335
133I_DG-40:DC40_J-1.138-0.421-0.952-16.778-15.0915.451
139I_DG-34:DC34_J-0.404-0.2810.512-11.848-20.243-2.1
140I_DG-33:DC33_J-0.193-0.0580.88412.0911.905-2.391
146I_DG-27:DC27_J-0.319-0.36-0.413-12.698-31.9040.334
158I_DG-15:DC15_J-0.0830.018-0.378-0.122-7.8134.246
159I_DG-14:DC14_J-0.0870.376-0.631-22.028-40.0796.799
163I_DG-10:DC10_J-0.607-0.171-0.086-7.698-7.2034.843
168I_DG-5:DC5_J-0.041-0.0780.037-0.804-15.15-0.561
171I_DG-2:DC2_J-0.530.2060.6095.779-2.6189.855
177I_DG4:DC-4_J-0.032-0.1240.3463.803-20.611-1.458
180I_DG7:DC-7_J-0.083-0.321-0.397-12.857-8.968-2.303
186I_DG13:DC-13_J-0.2280.2980.0826.083-1.24910.028
193I_DG20:DC-20_J-0.885-0.009-0.607-7.537-3.1330.225
196I_DG23:DC-23_J-1.2540.067-0.665-9.055-20.347-7.504
197I_DG24:DC-24_J-0.185-0.151-0.597-11.623-13.59410.001
199I_DG26:DC-26_J-0.828-0.1721.24327.3071.520.612
1102I_DG29:DC-29_J0.4180.4620.38-9.077-10.7128.319
1120I_DG47:DC-47_J0.7161.0940.415-16.713-22.2295.752
1121I_DG48:DC-48_J-1.4830.40.97-3.544-13.8127.383
1123I_DG51:DC-51_J-1.1670.6540.218-10.92-18.84811.934
1129I_DG57:DC-57_J-0.312-0.0920.523-11.665-14.8580.347
1132I_DG60:DC-60_J0.4990.1920.6478.645-13.19810.153
1133I_DG61:DC-61_J-0.02-0.098-0.594-6.096-19.1072.577
1135I_DG63:DC-63_J-0.792-0.235-0.556-8.889-10.172-1.202
1136I_DG64:DC-64_J-0.2380.0120.2066.667-9.0666.132
1142I_DG70:DC-70_J-0.11-0.27-0.378-5.063-8.6221.602
12I_DT-71:DA71_J-0.07-0.1530.1230.92-9.533-2.806
16I_DT-67:DA67_J-0.045-0.129-0.2118.74-7.3480.391
18I_DT-65:DA65_J0.6120.156-0.07810.003-9.252-0.299
114I_DT-59:DA59_J-1.2930.288-0.135-2.578-21.187-4.105
120I_DT-53:DA53_J0.060.2630.1562.884-10.702-1.684
123I_DT-50:DA50_J-0.0230.736-0.05311.727-31.17912.772
132I_DT-41:DA41_J0.322-0.158-0.173-3.622-14.2380.725
134I_DT-39:DA39_J0.313-0.367-0.9375.615-10.544-0.715
136I_DT-37:DA37_J-0.4140.1541.039-2.944-14.5578.881
137I_DT-36:DA36_J0.206-0.2450.549-13.293-17.409-4.032
138I_DT-35:DA35_J-0.135-0.3321.419-19.623-8.597-0.074
145I_DT-28:DA28_J-0.004-0.189-0.1116.685-7.2674.909
148I_DT-25:DA25_J0.109-0.0610.3421.025-37.1225.456
152I_DT-21:DA21_J0.499-0.0060.27113.75-16.870.23
162I_DT-11:DA11_J0.354-0.077-0.24328.3870.4642.133
164I_DT-9:DA9_J0.143-0.2230.346-9.917-18.8944.685
165I_DT-8:DA8_J0.242-0.129-0.0861.827-12.4663.016
170I_DT-3:DA3_J0.094-0.0640.072-7.897-12.453-6.925
174I_DT1:DA-1_J0.217-0.03-0.04-1.432-16.2962.377
179I_DT6:DA-6_J-0.489-0.2910.2124.993-28.515-6.49
185I_DT12:DA-12_J-0.233-0.179-0.6255.975-13.1537.615
189I_DT16:DA-16_J-0.7490.1540.1451.1326.1255.465
190I_DT17:DA-17_J-0.668-0.116-0.0466.258-15.114-0.025
191I_DT18:DA-18_J-1.1160.047-1.1246.992-18.30710.924
192I_DT19:DA-19_J1.337-0.297-1.0392.848-9.96-6.89
195I_DT22:DA-22_J-0.621-0.1330.677-15.131-13.993-6.465
1103I_DT30:DA-30_J0.0960.3780.503-13.833-14.664-3.83
1104I_DT31:DA-31_J0.4650.3070.126-12.585-12.6545.66
1105I_DT32:DA-32_J0.0870.195-0.73-11.377-27.388-1.585
1111I_DT38:DA-38_J-0.556-0.093-0.0048.671-8.731-6.692
1116I_DT43:DA-43_J-0.2170.3890.075-19.79-19.4121.299
1117I_DT44:DA-44_J0.7450.2480.345-19.607-10.7191.182
1118I_DT45:DA-45_J1.128-0.0730.125-16.954-22.0019.906
1119I_DT46:DA-46_J-0.3990.6620.184-22.624-23.7862.123
1124I_DT52:DA-52_J0.3550.6960.0131.425-15.0272.071
1126I_DT54:DA-54_J-0.0160.19-0.2196.162-14.4987.18
1128I_DT56:DA-56_J-0.098-0.3510.657-11.145-10.2830.549
1134I_DT62:DA-62_J0.055-0.241-0.524-1.814-11.6960.02
1138I_DT66:DA-66_J0.302-0.0150.4762.814-12.7163.407
1140I_DT68:DA-68_J-0.224-0.3620.46-3.593-16.51-0.709
1141I_DT69:DA-69_J0.285-0.2220.013-2.212-11.295-4.532
1144I_DT72:DA-72_J-0.548-0.282-0.36813.705-3.33-4.11

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.