4JV0: Base Pair Morphology Parameters

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As of 23-Nov-2022 number of released structures: 12471

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NDB ID: NA2306 PDB ID: 4JV0

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	3	B_DA7:DT30_C	-0.278	-0.187	-0.447	-6.994	-0.126	1.403
1	4	B_DA8:DT29_C	0.018	-0.111	0.054	0.191	-12.836	4.941
1	6	B_DC10:DG27_C	-0.171	-0.347	-0.041	4.514	-16.088	0.185
1	7	B_DC11:DG26_C	-0.579	-0.488	0.383	-6.604	-7.55	-6.542
1	10	B_DC14:DG23_C	-0.129	-0.261	0.38	-3.842	-9.477	4.48
1	11	B_DC15:DG22_C	-0.074	-0.17	0.513	-16.427	-10.344	-0.375
1	12	B_DC16:DG21_C	0.099	-0.263	-0.103	-3.6	-6.227	-8.79
1	13	B_DC17:DG20_C	0.175	-0.369	-0.22	0.136	-7.57	1.453
1	14	B_DC18:DG19_C	-0.075	-0.297	-0.255	3.279	-7.642	-9.435
1	2	B_DG6:DC31_C	-0.807	-0.308	-0.486	-11.809	-9.733	2.911
1	5	B_DT9:DA28_C	-0.231	-0.23	-0.161	9.757	-8.254	2.907
1	8	B_DT12:DA25_C	-0.338	-0.206	0.197	-3.972	-7.409	-2.576
1	9	B_DT13:DA24_C	-0.428	-0.302	0.214	-5.104	-11.522	-5.279
1	1	B_KAG5:DC32_C	0.861	-0.092	-0.384	-3.333	-10.122	2.169

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.