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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA2306
PDB ID:
4JV0
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
3
B_DA7:DT30_C
-0.278
-0.187
-0.447
-6.994
-0.126
1.403
1
4
B_DA8:DT29_C
0.018
-0.111
0.054
0.191
-12.836
4.941
1
6
B_DC10:DG27_C
-0.171
-0.347
-0.041
4.514
-16.088
0.185
1
7
B_DC11:DG26_C
-0.579
-0.488
0.383
-6.604
-7.55
-6.542
1
10
B_DC14:DG23_C
-0.129
-0.261
0.38
-3.842
-9.477
4.48
1
11
B_DC15:DG22_C
-0.074
-0.17
0.513
-16.427
-10.344
-0.375
1
12
B_DC16:DG21_C
0.099
-0.263
-0.103
-3.6
-6.227
-8.79
1
13
B_DC17:DG20_C
0.175
-0.369
-0.22
0.136
-7.57
1.453
1
14
B_DC18:DG19_C
-0.075
-0.297
-0.255
3.279
-7.642
-9.435
1
2
B_DG6:DC31_C
-0.807
-0.308
-0.486
-11.809
-9.733
2.911
1
5
B_DT9:DA28_C
-0.231
-0.23
-0.161
9.757
-8.254
2.907
1
8
B_DT12:DA25_C
-0.338
-0.206
0.197
-3.972
-7.409
-2.576
1
9
B_DT13:DA24_C
-0.428
-0.302
0.214
-5.104
-11.522
-5.279
1
1
B_KAG5:DC32_C
0.861
-0.092
-0.384
-3.333
-10.122
2.169
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.