A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA2306  PDB ID: 4JV0 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13B_DA7:DT30_C-0.278-0.187-0.447-6.994-0.1261.403
14B_DA8:DT29_C0.018-0.1110.0540.191-12.8364.941
16B_DC10:DG27_C-0.171-0.347-0.0414.514-16.0880.185
17B_DC11:DG26_C-0.579-0.4880.383-6.604-7.55-6.542
110B_DC14:DG23_C-0.129-0.2610.38-3.842-9.4774.48
111B_DC15:DG22_C-0.074-0.170.513-16.427-10.344-0.375
112B_DC16:DG21_C0.099-0.263-0.103-3.6-6.227-8.79
113B_DC17:DG20_C0.175-0.369-0.220.136-7.571.453
114B_DC18:DG19_C-0.075-0.297-0.2553.279-7.642-9.435
12B_DG6:DC31_C-0.807-0.308-0.486-11.809-9.7332.911
15B_DT9:DA28_C-0.231-0.23-0.1619.757-8.2542.907
18B_DT12:DA25_C-0.338-0.2060.197-3.972-7.409-2.576
19B_DT13:DA24_C-0.428-0.3020.214-5.104-11.522-5.279
11B_KAG5:DC32_C0.861-0.092-0.384-3.333-10.1222.169

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.