A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 23-Nov-2022 number of released structures: 12471
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NDB ID: NA2306  PDB ID: 4JV0 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13BB_DA7DA8:DT29DT30_CC-0.523-0.3373.248-2.825-0.10636.935-0.5170.4443.278-0.1684.45237.039
14BB_DA8DT9:DA28DT29_CC0.022-0.693.104-0.0245.19726.498-2.709-0.0542.91811.20.05226.994
16BB_DC10DC11:DG26DG27_CC-0.43-0.893.701-2.0485.33431.721-2.6630.3693.5299.6613.70932.218
17BB_DC11DT12:DA25DG26_CC0.252-0.2023.3111.0-0.62434.157-0.243-0.2693.32-1.063-1.70334.177
110BB_DC14DC15:DG22DG23_CC-0.276-0.8773.5120.8385.29429.088-2.8960.7273.29510.429-1.65229.568
111BB_DC15DC16:DG21DG22_CC-0.833-0.4813.0194.3325.61531.45-1.7622.192.75710.198-7.86732.22
112BB_DC16DC17:DG20DG21_CC1.614-0.2993.2844.1069.5730.486-2.291-2.163.2317.567-7.53732.175
113BB_DC17DC18:DG19DG20_CC-1.21-0.0463.337-2.8543.31132.124-0.6861.6473.4075.9495.12832.412
12BB_DG6DA7:DT30DC31_CC-0.074-0.3523.271-2.2157.55729.148-2.196-0.3033.08114.684.30330.171
15BB_DT9DC10:DG27DA28_CC0.115-0.223.411-2.185-3.06137.7030.071-0.4693.406-4.7233.3737.883
18BB_DT12DT13:DA24DA25_CC0.35-0.5313.2382.0455.03332.44-1.782-0.2753.1388.931-3.62932.88
19BB_DT13DC14:DG23DA24_CC0.618-0.393.215-2.6757.08235.42-1.59-1.3583.0311.4784.33536.194
11BB_KAG5DG6:DC31DC32_CC0.019-1.1123.6041.7212.18720.934-6.5610.5082.56630.387-4.28924.249

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.