A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 28-Sep-2022 number of released structures: 12311
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NDB ID: NA2305  PDB ID: 4JV1 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12B_DA607:DT512_C0.505-0.145-0.158-7.644-8.1936.956
13B_DA608:DT511_C-0.337-0.0140.09-1.758-9.3784.867
15B_DC610:DG509_C0.299-0.0980.0116.928-10.4076.7
16B_DC611:DG508_C-0.431-0.1930.061-7.851-4.9670.418
19B_DC614:DG505_C-0.437-0.166-0.4611.184-8.277-0.858
110B_DC615:DG504_C0.126-0.0070.357-11.296-6.5263.507
111B_DC616:DG503_C-0.172-0.1390.0481.356-4.405-7.855
112B_DC617:DG502_C0.031-0.2510.016-2.672-1.970.453
113B_DC618:DG501_C0.085-0.108-0.1535.384-6.973-1.291
11B_DG606:DC513_C-0.3050.01-0.31-19.072-7.3614.567
14B_DT609:DA510_C-0.697-0.0860.1078.396-8.4451.885
17B_DT612:DA507_C-0.643-0.2780.025-4.93-7.9173.237
18B_DT613:DA506_C-0.391-0.16-0.0592.421-13.192-0.695

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.