4JV1: Base Pair Morphology Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA2305 PDB ID: 4JV1

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	B_DA607:DT512_C	0.505	-0.145	-0.158	-7.644	-8.193	6.956
1	3	B_DA608:DT511_C	-0.337	-0.014	0.09	-1.758	-9.378	4.867
1	5	B_DC610:DG509_C	0.299	-0.098	0.011	6.928	-10.407	6.7
1	6	B_DC611:DG508_C	-0.431	-0.193	0.061	-7.851	-4.967	0.418
1	9	B_DC614:DG505_C	-0.437	-0.166	-0.461	1.184	-8.277	-0.858
1	10	B_DC615:DG504_C	0.126	-0.007	0.357	-11.296	-6.526	3.507
1	11	B_DC616:DG503_C	-0.172	-0.139	0.048	1.356	-4.405	-7.855
1	12	B_DC617:DG502_C	0.031	-0.251	0.016	-2.672	-1.97	0.453
1	13	B_DC618:DG501_C	0.085	-0.108	-0.153	5.384	-6.973	-1.291
1	1	B_DG606:DC513_C	-0.305	0.01	-0.31	-19.072	-7.361	4.567
1	4	B_DT609:DA510_C	-0.697	-0.086	0.107	8.396	-8.445	1.885
1	7	B_DT612:DA507_C	-0.643	-0.278	0.025	-4.93	-7.917	3.237
1	8	B_DT613:DA506_C	-0.391	-0.16	-0.059	2.421	-13.192	-0.695

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.