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A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID:
NA2305
PDB ID:
4JV1
 
Base Pair Morphology Parameters
CSV Format
Model Number
Pair Number
Pair Name
Shear
Stretch
Stagger
Buckle
Propellor
Opening
1
2
B_DA607:DT512_C
0.505
-0.145
-0.158
-7.644
-8.193
6.956
1
3
B_DA608:DT511_C
-0.337
-0.014
0.09
-1.758
-9.378
4.867
1
5
B_DC610:DG509_C
0.299
-0.098
0.011
6.928
-10.407
6.7
1
6
B_DC611:DG508_C
-0.431
-0.193
0.061
-7.851
-4.967
0.418
1
9
B_DC614:DG505_C
-0.437
-0.166
-0.461
1.184
-8.277
-0.858
1
10
B_DC615:DG504_C
0.126
-0.007
0.357
-11.296
-6.526
3.507
1
11
B_DC616:DG503_C
-0.172
-0.139
0.048
1.356
-4.405
-7.855
1
12
B_DC617:DG502_C
0.031
-0.251
0.016
-2.672
-1.97
0.453
1
13
B_DC618:DG501_C
0.085
-0.108
-0.153
5.384
-6.973
-1.291
1
1
B_DG606:DC513_C
-0.305
0.01
-0.31
-19.072
-7.361
4.567
1
4
B_DT609:DA510_C
-0.697
-0.086
0.107
8.396
-8.445
1.885
1
7
B_DT612:DA507_C
-0.643
-0.278
0.025
-4.93
-7.917
3.237
1
8
B_DT613:DA506_C
-0.391
-0.16
-0.059
2.421
-13.192
-0.695
The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures',
Nucleic Acids Res
.
31(17)
, 5108-21. Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures',
Nat Protoc
.
3(7)
, 1213-27.