4JV1: Base Pair Morphology Step Parameters

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NDB ID: NA2305 PDB ID: 4JV1

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	BB_DA607DA608:DT511DT512_CC	-0.694	-0.209	3.239	-3.455	1.46	31.923	-0.64	0.634	3.281	2.643	6.254	32.137
1	3	BB_DA608DT609:DA510DT511_CC	-0.225	-0.752	3.041	-1.892	2.189	24.882	-2.331	0.003	2.974	5.059	4.371	25.047
1	5	BB_DC610DC611:DG508DG509_CC	-0.499	-0.961	3.574	-0.633	7.682	31.991	-3.092	0.766	3.27	13.691	1.129	32.883
1	6	BB_DC611DT612:DA507DG508_CC	-0.044	-0.167	3.208	0.323	5.999	32.359	-1.296	0.131	3.127	10.65	-0.574	32.898
1	9	BB_DC614DC615:DG504DG505_CC	0.359	-0.64	3.623	-5.506	9.3	32.274	-2.692	-1.56	3.218	16.174	9.576	33.99
1	10	BB_DC615DC616:DG503DG504_CC	-0.769	-0.389	3.013	3.473	5.513	29.95	-1.714	2.07	2.793	10.512	-6.621	30.635
1	11	BB_DC616DC617:DG502DG503_CC	1.662	-0.348	3.444	4.61	8.306	30.425	-2.267	-2.123	3.441	15.362	-8.526	31.84
1	12	BB_DC617DC618:DG501DG502_CC	-0.964	-0.121	3.08	-0.45	3.533	32.783	-0.779	1.626	3.063	6.237	0.795	32.971
1	1	BB_DG606DA607:DT512DC513_CC	0.198	0.035	3.134	-3.169	7.346	30.194	-1.271	-0.944	3.023	13.799	5.953	31.212
1	4	BB_DT609DC610:DG509DA510_CC	0.711	-0.352	3.358	0.997	-3.97	39.917	-0.044	-0.919	3.393	-5.796	-1.455	40.117
1	7	BB_DT612DT613:DA506DA507_CC	0.111	-0.347	3.063	0.7	3.292	33.354	-1.106	-0.086	3.017	5.717	-1.216	33.519
1	8	BB_DT613DC614:DG505DA506_CC	0.409	-0.339	3.294	2.399	2.698	32.394	-1.078	-0.308	3.277	4.817	-4.284	32.589

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.