A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA2305  PDB ID: 4JV1 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
12BB_DA607DA608:DT511DT512_CC-0.694-0.2093.239-3.4551.4631.923-0.640.6343.2812.6436.25432.137
13BB_DA608DT609:DA510DT511_CC-0.225-0.7523.041-1.8922.18924.882-2.3310.0032.9745.0594.37125.047
15BB_DC610DC611:DG508DG509_CC-0.499-0.9613.574-0.6337.68231.991-3.0920.7663.2713.6911.12932.883
16BB_DC611DT612:DA507DG508_CC-0.044-0.1673.2080.3235.99932.359-1.2960.1313.12710.65-0.57432.898
19BB_DC614DC615:DG504DG505_CC0.359-0.643.623-5.5069.332.274-2.692-1.563.21816.1749.57633.99
110BB_DC615DC616:DG503DG504_CC-0.769-0.3893.0133.4735.51329.95-1.7142.072.79310.512-6.62130.635
111BB_DC616DC617:DG502DG503_CC1.662-0.3483.4444.618.30630.425-2.267-2.1233.44115.362-8.52631.84
112BB_DC617DC618:DG501DG502_CC-0.964-0.1213.08-0.453.53332.783-0.7791.6263.0636.2370.79532.971
11BB_DG606DA607:DT512DC513_CC0.1980.0353.134-3.1697.34630.194-1.271-0.9443.02313.7995.95331.212
14BB_DT609DC610:DG509DA510_CC0.711-0.3523.3580.997-3.9739.917-0.044-0.9193.393-5.796-1.45540.117
17BB_DT612DT613:DA506DA507_CC0.111-0.3473.0630.73.29233.354-1.106-0.0863.0175.717-1.21633.519
18BB_DT613DC614:DG505DA506_CC0.409-0.3393.2942.3992.69832.394-1.078-0.3083.2774.817-4.28432.589

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.