A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: NA2388  PDB ID: 4KFC 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12Y_DA2:DT29_Z-0.152-0.1660.36113.516-16.778-2.421
18Y_DA8:DT23_Z0.46-0.089-0.072-6.144-5.953-1.974
110Y_DA10:DT21_Z-0.042-0.0890.28615.281-8.454-1.429
119Y_DA19:DT12_Z-0.004-0.2190.8821.725-2.942-6.685
121Y_DA21:DT10_Z1.1830.1250.1115.012-13.3478.646
11Y_DC1:DG30_Z0.058-0.1190.13-3.472-9.356-0.147
111Y_DC11:DG20_Z0.739-0.3090.179-0.522-15.112-1.105
120Y_DC20:DG11_Z1.3390.759-0.35116.356-3.19810.716
122Y_DC22:DG9_Z-0.752-0.1220.167-3.445-13.686-3.417
123Y_DC23:DG8_Z-1.8910.3060.0030.805-24.288-17.017
124Y_DC24:DG7_Z-1.0810.701-0.115-16.167-9.84-22.942
125Y_DC25:DG6_Z-1.146-0.2130.646-8.495-1.58-2.71
127Y_DC27:DG4_Z3.8-0.3380.10215.55-24.5343.136
128Y_DC28:DG3_Z0.956-0.483-0.2268.705-40.687-7.044
129Y_DC29:DG2_Z0.4490.8631.147-13.247-8.71729.739
126Y_DG26:DC5_Z-0.224-0.2781.09117.287-12.965-5.699
130Y_DG30:DC1_Z-3.3-0.981-0.5520.39-10.1152.348
13Y_DT3:DA28_Z-0.395-0.1620.2985.15-15.892-1.656
14Y_DT4:DA27_Z-0.090.0520.347-3.211-17.8342.797
15Y_DT5:DA26_Z-0.085-0.1070.193-3.386-16.562-3.161
16Y_DT6:DA25_Z-0.535-0.1110.374-13.959-12.317-3.414
17Y_DT7:DA24_Z0.349-0.2310.539-13.985-13.548-5.656
19Y_DT9:DA22_Z-0.232-0.055-0.08713.05-3.318-2.579
112Y_DT12:DA19_Z-0.138-0.137-0.033-1.697-17.578-1.666
113Y_DT13:DA18_Z-0.589-0.1390.056-3.215-16.35-1.352
114Y_DT14:DA17_Z-0.364-0.1250.435-2.926-12.94-3.959
115Y_DT15:DA16_Z-0.250.3060.0493.383-24.7138.159
116Y_DT16:DA15_Z-0.0580.0830.6661.261-31.66110.397
117Y_DT17:DA14_Z-0.63-0.1840.483-0.347-28.116-10.49
118Y_DT18:DA13_Z0.056-0.1170.114-5.476-12.923-5.244

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.