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As of 18-May-2022 number of released structures: 12082
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NDB ID: NA2420  PDB ID: 4KHN 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13C_DA7:DT113_D0.11-0.242-0.0642.64-7.172.682
14C_DA8:DT112_D0.071-0.312-0.3496.363-1.8391.711
17C_DA11:DT109_D0.182-0.2070.0270.997-8.581-2.623
16C_DC10:DG110_D0.14-0.1280.0423.69-8.7771.572
110C_DC14:DG106_D0.458-0.149-0.1334.196-13.478-0.115
111C_DC15:DG105_D0.309-0.326-0.245.158-11.5591.233
113C_DC17:DG103_D0.517-0.018-0.25710.083-2.1094.576
11C_DG5:DC115_D-0.251-0.27-0.201-14.065-4.3150.221
15C_DG9:DC111_D-0.118-0.1770.1151.658-9.3480.717
18C_DG12:DC108_D-0.278-0.1840.0072.684-13.7282.162
112C_DG16:DC104_D-0.12-0.2830.6675.519-7.307-6.251
12C_DT6:DA114_D-0.114-0.106-0.0963.4251.125-3.541
19C_DT13:DA107_D-0.084-0.083-0.1430.741-13.295-0.265
116E_DA7:DT113_F-0.106-0.324-0.071-0.105-6.3734.133
117E_DA8:DT112_F-0.313-0.212-0.324.794-0.4454.183
120E_DA11:DT109_F0.065-0.1070.159-2.051-7.552.289
119E_DC10:DG110_F0.055-0.078-0.0626.991-12.553-0.69
123E_DC14:DG106_F0.34-0.1590.167-4.268-9.941-3.959
124E_DC15:DG105_F0.545-0.425-0.3084.38-7.1383.399
126E_DC17:DG103_F0.238-0.5780.4361.846-3.326-4.13
114E_DG5:DC115_F-0.095-0.298-0.196-15.712-1.557-2.25
118E_DG9:DC111_F-0.385-0.143-0.028-1.81-4.7581.851
121E_DG12:DC108_F-0.591-0.216-0.219-1.361-14.1582.907
125E_DG16:DC104_F0.036-0.1720.4026.147-13.8920.341
115E_DT6:DA114_F-0.162-0.009-0.1944.9962.165-0.376
122E_DT13:DA107_F-0.383-0.002-0.06-3.389-13.7843.006

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.