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As of 18-May-2022 number of released structures: 12082
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NDB ID: NA2420  PDB ID: 4KHN 


Base Pair Morphology Step Parameters

CSV Format

Model NumberStep NumberStep NameShiftSlideRiseTiltRollTwistX-DisplacementY-DisplacementHelical RiseInclinationTipHelical Twist
13CC_DA7DA8:DT112DT113_DD0.135-0.8763.363-0.0091.98224.324-2.703-0.3233.2824.6940.02224.403
14CC_DA8DG9:DC111DT112_DD-0.768-0.5163.482-7.121-0.41435.334-0.770.143.57-0.67411.58636.025
17CC_DA11DG12:DC108DT109_DD0.694-0.5163.303-1.0096.57428.963-2.373-1.5653.08812.931.98529.701
16CC_DC10DA11:DT109DG110_DD-0.986-0.5583.325-2.7235.03834.67-1.691.223.288.3834.53135.125
110CC_DC14DC15:DG105DG106_DD0.1940.113.1743.4657.48235.081-0.8610.1673.13512.205-5.65236.007
111CC_DC15DG16:DC104DG105_DD-0.2670.4693.394-5.953.0134.0580.301-0.5113.4185.07810.0434.686
11CC_DG5DT6:DA114DC115_DD-0.784-0.9052.9720.8636.96427.375-3.2661.7822.6414.416-1.78728.243
15CC_DG9DC10:DG110DC111_DD-0.602-0.73.3-0.2285.33731.713-2.2111.0463.1479.680.41432.148
18CC_DG12DT13:DA107DC108_DD-0.777-0.7243.3410.4393.97733.441-1.9031.4143.2266.881-0.75933.673
112CC_DG16DC17:DG103DC104_DD0.786-0.223.1648.0372.61334.263-0.748-0.1143.2354.353-13.3935.26
12CC_DT6DA7:DT113DA114_DD0.177-0.7783.44-3.2371.88139.23-1.386-0.6623.3762.7944.80839.401
19CC_DT13DC14:DG106DA107_DD0.4330.0043.2053.6033.22136.244-0.432-0.23.2215.149-5.76136.554
115EE_DA7DA8:DT112DT113_FF0.404-0.9573.429-0.282.02224.565-2.883-1.0363.3364.7410.65724.649
116EE_DA8DG9:DC111DT112_FF-0.889-0.653.518-7.1920.4833.504-1.1870.263.6160.8212.29934.249
119EE_DA11DG12:DC108DT109_FF0.16-0.5643.331-0.4985.03730.051-2.083-0.4043.1939.6280.95230.465
118EE_DC10DA11:DT109DG110_FF-0.571-0.5953.47-6.3237.89534.849-2.129-0.023.31112.8510.29236.244
122EE_DC14DC15:DG105DG106_FF0.47-0.1333.0036.8646.57538.023-0.930.0632.9789.904-10.3439.151
123EE_DC15DG16:DC104DG105_FF-0.3350.4833.278-3.1895.03931.266-0.0580.0173.339.2445.8531.816
113EE_DG5DT6:DA114DC115_FF-0.455-1.0022.9342.4045.07825.388-3.4311.5822.63311.378-5.38525.992
117EE_DG9DC10:DG110DC111_FF-0.98-0.5843.0980.7483.39833.645-1.5181.7983.0055.852-1.28833.819
120EE_DG12DT13:DA107DC108_FF-0.757-0.653.289-1.1383.74530.942-1.921.1923.2166.9842.12231.182
124EE_DG16DC17:DG103DC104_FF0.507-0.0133.370.267-3.83739.1730.45-0.723.359-5.707-0.39739.354
114EE_DT6DA7:DT113DA114_FF0.316-0.6473.547-2.0883.80938.965-1.452-0.743.455.6893.11939.197
121EE_DT13DC14:DG106DA107_FF-0.080.0073.298-1.8038.4637.014-1.08-0.1093.22213.1062.79437.977

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.