A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 14-Aug-2019 number of released structures: 10334
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NDB ID: NA2437  PDB ID: 4KNY 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12Y_DA2:DT29_Z-0.124-0.1350.12310.08-20.279-3.706
18Y_DA8:DT23_Z0.17-0.0840.116-6.394-6.847-2.066
110Y_DA10:DT21_Z0.061-0.0770.35216.081-6.078-1.959
119Y_DA21:DT10_Z0.802-0.0550.0460.597-13.711-6.894
11Y_DC1:DG30_Z0.251-0.1370.237-4.656-8.1250.045
111Y_DC11:DG20_Z0.974-0.391-0.0773.623-15.466-0.147
120Y_DC22:DG9_Z-0.389-0.0940.251-6.744-17.428-2.011
121Y_DC23:DG8_Z-1.0710.218-0.53-7.572-9.147-25.378
122Y_DC24:DG7_Z-1.9450.391-0.106-10.543-4.97-12.785
13Y_DT3:DA28_Z-0.579-0.1550.3463.428-17.935-2.215
14Y_DT4:DA27_Z-0.236-0.1380.495-3.674-17.6-5.788
15Y_DT5:DA26_Z0.048-0.140.379-7.86-19.02-5.677
16Y_DT6:DA25_Z-0.803-0.090.242-11.29-9.831-2.911
17Y_DT7:DA24_Z0.547-0.2440.233-9.769-11.788-2.018
19Y_DT9:DA22_Z-0.2160.1320.19210.178-1.4986.868
112Y_DT12:DA19_Z-0.278-0.1220.586-11.075-13.579-4.372
113Y_DT13:DA18_Z-0.266-0.150.392-7.451-24.769-5.151
114Y_DT14:DA17_Z-0.695-0.1470.4691.219-17.332-5.258
115Y_DT15:DA16_Z0.0860.350.2420.466-26.361.505
116Y_DT16:DA15_Z-1.0270.0550.2824.874-34.73-4.362
117Y_DT17:DA14_Z-1.051-0.190.199-0.435-34.04-10.025
118Y_DT18:DA13_Z0.07-0.1170.335-3.663-14.585-6.344

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.