A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 22-Jun-2022 number of released structures: 12128
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NDB ID: NA2742  PDB ID: 4MZR 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
13K_DA5:DT48_L-1.248-0.4230.15515.4692.608-9.096
15K_DA7:DT46_L0.2370.0840.1675.965-11.85-4.121
113K_DA15:DT38_L-0.175-0.2350.23516.113-12.796-0.825
115K_DA17:DT36_L-0.254-0.058-0.018-0.398-8.946-0.079
16K_DC8:DG45_L0.449-0.1040.0135.509-11.641.378
110K_DC12:DG41_L0.509-0.159-0.4751.844-5.113.925
111K_DC13:DG40_L-0.391-0.1740.363-9.288-14.295-8.404
112K_DC14:DG39_L0.235-0.285-0.6563.406-1.262-0.483
116K_DC18:DG35_L0.336-0.183-0.1297.151-6.1042.673
120K_DC22:DG31_L-0.2980.014-0.2362.384-8.8843.786
121K_DC23:DG30_L0.569-0.301-0.108-2.043-13.06-7.241
122K_DC24:DG29_L0.733-0.20.134-1.321.609-3.492
12K_DG4:DC49_L0.131-0.0710.064-1.717-4.3560.212
14K_DG6:DC47_L0.222-0.0780.4957.303-12.864-5.897
19K_DG11:DC42_L-0.0180.1520.197-5.948-3.0522.49
114K_DG16:DC37_L-0.018-0.2430.53114.957-14.566-5.918
119K_DG21:DC32_L-0.5810.219-0.032-5.462-5.2810.719
123K_DG25:DC28_L0.1620.062-0.009-2.851-16.821-6.787
11K_DT3:DA50_L2.047-0.423-0.3016.408-8.5274.816
17K_DT9:DA44_L-1.143-0.3630.1710.213-12.7985.173
18K_DT10:DA43_L-0.321-0.1240.1328.294-11.45215.913
117K_DT19:DA34_L-0.21-0.2380.395-8.15-13.53413.545
118K_DT20:DA33_L-0.012-0.014-0.103-0.33-11.80518.916
124K_DT26:DA27_L0.703-0.484-0.364-3.094-3.6132.125

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.