A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 21-Aug-2019 number of released structures: 10343
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NDB ID: NA2804  PDB ID: 4N76 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA3:DT17_D0.192-0.1530.142-6.611-16.9038.319
16C_DA7:DT13_D0.7560.055-0.35-14.795-17.61-2.712
19C_DA10:DT10_D0.3250.0910.0688.253-31.3286.318
11C_DG2:DC18_D0.109-0.343-0.359-3.699-18.819-1.874
13C_DG4:DC16_D-0.784-0.3060.397-2.451-14.6468.61
14C_DG5:DC15_D0.216-0.369-0.371-8.8-16.514-5.326
17C_DG8:DC12_D0.708-0.09-0.096-3.944-19.212-8.136
15C_DT6:DA14_D-0.66-0.214-0.31612.629-8.599-9.472
18C_DT9:DA11_D0.376-0.20.2885.774-9.139-9.716
111E_DA3:DT17_F0.172-0.0080.226-5.177-16.5397.955
115E_DA7:DT13_F0.5960.081-0.305-15.139-18.936-2.343
118E_DA10:DT10_F0.5770.1090.025.209-23.853-3.898
110E_DG2:DC18_F-0.076-0.203-0.287-3.14-17.695-2.037
112E_DG4:DC16_F-0.752-0.2320.464-1.132-14.368.444
113E_DG5:DC15_F0.232-0.382-0.292-7.42-16.866-5.212
116E_DG8:DC12_F0.5350.071-0.058-4.905-20.012-8.024
114E_DT6:DA14_F-0.708-0.268-0.27113.343-9.637-9.275
117E_DT9:DA11_F0.2950.0880.3654.707-9.466-9.696

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.