A Portal for Three-dimensional Structural Information about Nucleic Acids
As of 16-Oct-2019 number of released structures: 10422
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NDB ID: NA2805  PDB ID: 4NCA 


Base Pair Morphology Parameters

CSV Format

Model NumberPair NumberPair NameShearStretchStaggerBucklePropellorOpening
12C_DA3:DT17_D0.181-0.153-0.035-5.898-17.424.276
16C_DA7:DT13_D0.407-0.097-0.392-15.153-19.906-2.084
19C_DA10:DT10_D0.303-0.180.5864.1-11.0971.301
11C_DG2:DC18_D-0.369-0.265-0.525-9.021-14.031-0.551
13C_DG4:DC16_D-0.212-0.1690.135-2.927-15.240.64
14C_DG5:DC15_D-0.131-0.1520.1062.824-9.526-0.534
17C_DG8:DC12_D-0.17-0.2650.066-7.165-22.3163.312
110C_DG11:DC6_G0.019-0.0290.3812.645-7.9050.183
111C_DG12:DC5_G-0.037-0.2190.021-11.037-13.235-2.093
114C_DG15:DC2_G0.1-0.390.014-5.076-13.5853.001
15C_DT6:DA14_D-0.453-0.2010.0435.567-8.755-4.963
18C_DT9:DA11_D0.405-0.1390.032-7.0661.5240.893
112C_DT13:DA4_G-0.051-0.1090.387-14.233-7.901-2.146
113C_DT14:DA3_G-2.191-0.0650.158-3.841-25.00129.69
115C_DT16:DA1_G-0.706-0.120.1510.022-14.1771.933
117E_DA3:DT17_F0.12-0.1680.537-4.558-12.3154.18
121E_DA7:DT13_F0.011-0.183-0.244-12.2-17.8113.758
124E_DA10:DT10_F0.35-0.1710.390.83-13.1682.627
116E_DG2:DC18_F-0.294-0.204-0.236-7.942-12.5660.957
118E_DG4:DC16_F-0.046-0.1740.131-2.559-14.489-3.674
119E_DG5:DC15_F-0.114-0.233-0.0010.506-8.078-2.067
122E_DG8:DC12_F0.399-0.196-0.004-12.471-20.0541.911
125E_DG11:DC9_H-0.0460.0760.2921.592-6.9216.025
126E_DG12:DC8_H-0.182-0.126-0.107-9.937-10.51-1.234
129E_DG15:DC5_H0.205-0.375-0.234-6.948-10.2042.788
120E_DT6:DA14_F-0.217-0.325-0.142.09-13.593-9.397
123E_DT9:DA11_F0.065-0.2330.2-10.714-3.407-0.091
127E_DT13:DA7_H-0.492-0.2470.233-12.732-7.832-2.991
128E_DT14:DA6_H-1.437-0.1050.079-5.794-21.91717.286
130E_DT16:DA4_H-0.394-0.568-0.142-2.837-13.307-3.028

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.