4NCB: Base Pair Morphology Parameters

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As of 22-Jun-2022 number of released structures: 12128

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NDB ID: NA2806 PDB ID: 4NCB

Base Pair Morphology Parameters

CSV Format

Model Number	Pair Number	Pair Name	Shear	Stretch	Stagger	Buckle	Propellor	Opening
1	2	C_DA3:DT17_D	0.251	-0.004	0.312	-0.304	-15.609	7.32
1	6	C_DA7:DT13_D	-0.307	-0.191	-0.064	-19.185	-13.021	2.679
1	9	C_DA10:DT10_D	-0.093	-0.14	0.291	2.856	-11.077	2.244
1	1	C_DG2:DC18_D	-0.125	-0.271	-0.046	-1.593	-9.811	-0.525
1	3	C_DG4:DC16_D	-0.34	-0.127	0.48	2.492	-15.039	0.36
1	4	C_DG5:DC15_D	-0.11	-0.202	0.133	-10.036	-20.457	-1.893
1	7	C_DG8:DC12_D	-0.479	-0.053	-0.011	-12.327	-15.919	3.486
1	10	C_DG11:DC9_D	-0.522	-0.102	-0.213	7.061	-0.937	4.738
1	11	C_DG12:DC8_D	-0.173	-0.138	-0.186	-7.329	-7.411	1.175
1	13	C_DG15:DC5_D	-0.728	-0.023	-0.343	26.343	19.699	12.239
1	5	C_DT6:DA14_D	-0.179	-0.071	-0.205	4.463	-7.833	1.586
1	8	C_DT9:DA11_D	-0.019	-0.154	0.061	-10.605	-2.558	1.513
1	12	C_DT13:DA7_D	-0.197	-0.015	-0.073	-3.939	-10.186	-0.228
1	15	E_DA3:DT17_F	0.346	-0.117	0.155	-10.813	-13.226	2.843
1	19	E_DA7:DT13_F	-0.056	-0.115	-0.194	-18.626	-13.226	1.87
1	22	E_DA10:DT10_F	0.212	-0.158	0.084	-0.904	-9.006	4.234
1	14	E_DG2:DC18_F	-0.105	-0.187	-0.128	-5.657	-15.219	-1.352
1	16	E_DG4:DC16_F	-0.022	-0.099	0.109	-6.321	-14.871	2.031
1	17	E_DG5:DC15_F	-0.081	-0.063	-0.029	1.288	-6.834	-3.415
1	20	E_DG8:DC12_F	-0.218	-0.222	0.217	-8.059	-16.5	-0.395
1	23	E_DG11:DC9_H	-0.1	-0.312	-0.332	-1.269	-6.266	0.745
1	24	E_DG12:DC8_H	-0.272	-0.089	-0.048	-11.867	-9.476	2.988
1	27	E_DG15:DC5_H	-0.453	0.02	0.187	1.569	-5.499	11.432
1	18	E_DT6:DA14_F	-0.244	-0.195	-0.134	0.843	-13.576	-0.992
1	21	E_DT9:DA11_F	-0.232	-0.124	0.067	-11.63	-2.344	1.43
1	25	E_DT13:DA7_H	-0.292	-0.003	-0.004	-11.586	-6.618	-1.041
1	26	E_DT14:DA6_H	-1.726	-0.129	-0.252	-0.985	-16.236	24.838
1	28	E_DT16:DA4_H	0.227	-0.125	-0.14	9.845	-12.522	0.428

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.