4NCB: Base Pair Morphology Step Parameters

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As of 28-Sep-2022 number of released structures: 12311

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NDB ID: NA2806 PDB ID: 4NCB

Base Pair Morphology Step Parameters

CSV Format

Model Number	Step Number	Step Name	Shift	Slide	Rise	Tilt	Roll	Twist	X-Displacement	Y-Displacement	Helical Rise	Inclination	Tip	Helical Twist
1	2	CC_DA3DG4:DC16DT17_DD	-0.63	-0.059	3.182	-1.838	5.074	26.899	-1.348	0.885	3.153	10.769	3.902	27.425
1	6	CC_DA7DG8:DC12DT13_DD	0.162	-0.682	3.206	-1.328	10.76	30.743	-2.995	-0.508	2.806	19.549	2.413	32.555
1	9	CC_DA10DG11:DC9DT10_DD	0.709	-1.61	3.404	4.052	2.886	29.17	-3.785	-0.503	3.299	5.679	-7.971	29.582
1	1	CC_DG2DA3:DT17DC18_DD	0.289	-0.19	3.383	-3.367	-3.617	34.65	0.247	-1.006	3.343	-6.034	5.618	34.99
1	3	CC_DG4DG5:DC15DC16_DD	0.301	-0.539	3.664	3.245	6.879	36.772	-1.836	0.003	3.523	10.763	-5.077	37.524
1	4	CC_DG5DT6:DA14DC15_DD	0.564	-0.268	2.987	3.59	11.626	30.72	-2.271	-0.438	2.754	20.944	-6.467	32.988
1	7	CC_DG8DT9:DA11DC12_DD	0.013	-0.779	3.404	1.925	0.323	37.999	-1.238	0.234	3.394	0.496	-2.954	38.047
1	10	CC_DG11DG12:DC8DC9_DD	-0.377	-1.641	3.861	-0.53	-0.27	36.898	-2.549	0.51	3.877	-0.427	0.838	36.902
1	11	CC_DG12DT13:DA7DC8_DD	-1.045	-0.649	3.23	0.865	-3.131	30.029	-0.614	2.18	3.249	-6.02	-1.664	30.2
1	5	CC_DT6DA7:DT13DA14_DD	0.75	-0.915	3.78	0.824	8.579	35.012	-2.852	-1.081	3.482	13.999	-1.345	36.025
1	8	CC_DT9DA10:DT10DA11_DD	0.02	-0.884	2.946	-1.714	12.912	24.461	-4.472	-0.39	2.203	28.073	3.726	27.667
1	12	CC_DT13DG15:DC5DA7_DD	1.298	0.444	6.475	-4.912	7.594	57.453	-0.337	-1.851	6.362	7.846	5.075	58.101
1	14	EE_DA3DG4:DC16DT17_FF	-0.136	0.065	3.254	0.095	8.132	27.218	-1.737	0.298	3.14	16.809	-0.196	28.385
1	18	EE_DA7DG8:DC12DT13_FF	0.275	-0.539	3.084	-2.235	8.594	32.812	-2.19	-0.8	2.832	14.876	3.868	33.961
1	21	EE_DA10DG11:DC9DT10_HF	0.721	-2.031	3.45	5.141	4.443	26.426	-5.445	-0.212	3.154	9.519	-11.016	27.27
1	13	EE_DG2DA3:DT17DC18_FF	0.076	-0.007	3.418	-4.525	-1.935	37.588	0.247	-0.722	3.382	-2.987	6.985	37.898
1	15	EE_DG4DG5:DC15DC16_FF	-0.452	0.134	3.408	0.03	17.585	27.393	-3.035	0.815	2.958	33.155	-0.056	32.461
1	16	EE_DG5DT6:DA14DC15_FF	0.584	-0.061	3.286	2.965	2.825	34.748	-0.533	-0.52	3.308	4.71	-4.943	34.981
1	19	EE_DG8DT9:DA11DC12_FF	0.537	-1.011	3.477	5.653	1.688	33.697	-2.005	0.041	3.466	2.884	-9.66	34.195
1	22	EE_DG11DG12:DC8DC9_HH	0.017	-1.887	3.688	-0.919	2.442	33.329	-3.727	-0.199	3.543	4.25	1.6	33.428
1	23	EE_DG12DT13:DA7DC8_HH	-1.11	-0.631	3.327	2.207	-3.326	32.011	-0.536	2.397	3.292	-6.002	-3.983	32.253
1	26	EE_DG15DT16:DA4DC5_HH	-1.068	-0.231	3.052	1.736	2.036	37.205	-0.609	1.882	2.985	3.185	-2.717	37.298
1	17	EE_DT6DA7:DT13DA14_FF	0.819	-0.638	3.641	0.256	9.695	35.853	-2.417	-1.249	3.367	15.405	-0.406	37.1
1	20	EE_DT9DA10:DT10DA11_FF	0.39	-0.994	2.969	1.405	12.583	29.821	-3.683	-0.489	2.382	23.179	-2.588	32.341
1	24	EE_DT13DT14:DA6DA7_HH	0.792	0.092	3.076	2.514	7.041	23.594	-1.837	-1.118	3.042	16.69	-5.959	24.734
1	25	EE_DT14DG15:DC5DA6_HH	0.156	1.19	3.308	-6.548	12.683	37.221	0.174	-1.043	3.445	19.035	9.827	39.774

The above values were obtained using first alternate conformation only and calculated by 3DNA program.
Xiang-Jun Lu & Wilma K. Olson (2003). '3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures', Nucleic Acids Res.31(17), 5108-21.
Xiang-Jun Lu & Wilma K. Olson (2008). '3DNA: a versatile, integrated software system for the analysis, rebuilding and visualization of three-dimensional nucleic-acid structures', Nat Protoc.3(7), 1213-27.